BtaALTA0024415-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000023843 | RALGPS1
Description
Bos taurus Ral GEF with PH domain and SH3 binding motif 1 (RALGPS1), mRNA. [Source:RefSeq mRNA;Acc:NM_001193100]
Coordinates
chr11:97950839-97966749:+
Coord C1 exon
chr11:97950839-97950965
Coord A exon
chr11:97966666-97966668
Coord C2 exon
chr11:97966669-97966749
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAAGTGGGT
5' ss Score
4.82
3' ss Seq
TCAGCTCCTTTCCTCTGAAGCAG
3' ss Score
4.63
Exon sequences
Seq C1 exon
GCCCATCCAGTGGCTCCAGTTCCGCAAGGTTCAGCCGGCGGCCCACCTGTCCGGACGCCTCTGTGGCCGGCAGCATCCCCACACCCCCGGTCCCGAGACACAGGAAGAGCCACAGCCTGGGCAACAA
Seq A exon
CAG
Seq C2 exon
GGGACGTCTCTATGCCACGCTGGGGCCCAACTGGCGCGTTCCAGTCCGGAATTCTCCCAGAACCCGGAGCTGCGTCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000023843-27-38,27-37-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.907 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGACACAGGAAGAGCCACAG
R:
TCTGGGAGAATTCCGGACTGG
Band lengths:
94-97
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development