HsaALTA0006978-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000136828 | RALGPS1
Description
Ral GEF with PH domain and SH3 binding motif 1 [Source:HGNC Symbol;Acc:16851]
Coordinates
chr9:129957370-129973057:+
Coord C1 exon
chr9:129957370-129957496
Coord A exon
chr9:129972974-129972976
Coord C2 exon
chr9:129972977-129973057
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAAGTGGGT
5' ss Score
4.82
3' ss Seq
TTAACCCTTTTCCTCTGAAGCAG
3' ss Score
6.19
Exon sequences
Seq C1 exon
GTCCCTCTGCTGGCTCCGGTTCTGCGAGGTTCAGCCGGAGGCCCACCTGTCCTGACACATCTGTTGCTGGCAGCCTCCCCACACCTCCAGTCCCCAGACACAGGAAGAGCCACAGCCTAGGCAACAA
Seq A exon
CAG
Seq C2 exon
GGGACGTCTCTATGCCACCCTGGGGCCCAACTGGCGGGTTCCAGTTAGGAATTCTCCCAGAACCCGGAGCTGTGTCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136828-27-27,27-26-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.935 A=NA C2=0.080
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTCCCCAGACACAGGAAGA
R:
TCCGGGTTCTGGGAGAATTCC
Band lengths:
108-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)