HsaINT1028825 @ hg38
Intron Retention
Gene
ENSG00000136828 | RALGPS1
Description
Ral GEF with PH domain and SH3 binding motif 1 [Source:HGNC Symbol;Acc:HGNC:16851]
Coordinates
chr9:127196474-127199066:+
Coord C1 exon
chr9:127196474-127196631
Coord A exon
chr9:127196632-127199014
Coord C2 exon
chr9:127199015-127199066
Length
2383 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGC
5' ss Score
8.89
3' ss Seq
GACCTGTGTTCCTTTTCCAGGCA
3' ss Score
11.29
Exon sequences
Seq C1 exon
TATGATGTGTCAGTTGAGTGTAGTTGAGAGTAAAAGTGCGACATTCCCATCGGAGAAAGCAAGGCACCTACTGGACGACAGTGTCCTAGAGTCCCGCAGCCCCCGAAGGGGCCTGGCTCTGACCTCCTCCTCTGCTGTCACCAATGGACTCTCCCTAG
Seq A exon
GTAAGCGTCTCCGGCCTGCACATGATAGGCTGGTGGGCTGTAGGCCCAGCGTGTGCTCCGTGTCTGTCTCTGTGTCACTGTGCCATGCCCAGTGGCGCTATCATTCTTGGGGACCCAGTGGCCCCTCACCTCCCTGCAGAGGTGGCTGCCTGCAGGAATCGCCCAGACCCAGGGAAACCCTTGTCTCCTAGCCTCGTGGGCTTCATGAAGAGCCCTGGATCTGTCGTCATCCTGCTGGTGGCATGGCAGGCAGGTAGAAAAAGCAGCCAAACACATGCCTGAGACCAGCTGCCATTGGCTGGCAGCTCCCCAGACCAGACTGGACCACAGTCAGGCTTCTGTCCCTGGGGGATCATGACCCACAGGGCCCTGCAGGGCAAAGCAGGAGAGGCAGCCAGGGAGGGTAGCTGGGTGGCCACTGGGTTCTCACTGCGTACTTGTCTTCACAATGGGAAGCTAGAAGGAGGGAGGATGAAAAATTGATATTCAGGGATGAAATTGCATCACTGAGTGTCAGCCAGACGTGGTGCTTATGGCAACAGAAGAGACAGAAATTGTGCTGCTGAGGCTGGGATAAGAAGAACTTGACATTAGGACTCAGGCTGGTGTTGAGCTCTGGTTGTAGGTCCGTACCCCTGCAGTGTCCAGGTCAGCTGAGGACAGGTGGGCACCGCCCTGTTATTACTGCCGTCAGGCCAGTGTGCTCTGATGCCTGTTGCCTTTCGGTGTGCCTGTGCCTCTGTGGTCTGTGTGTCTGTGTGTCTGTCGGCTTCCCTTAGCAGGGAGTCCTCCCATGGCTGGTGGTTAGACCAGTTGCCGAGCTGGGAGTTGATCTTGTGAGGACTGCAGAGCAGAGGGCCCAGAGCATGGGGGTGGGGGGCGGGAGGGGACAGGAGAAACAGGCAGGAATCACTCCCATGTCTCTGTGAAAGCAAGTCAGTCTCAGAGGGCATGGGCAATATCAGTCCAGGGGTCGCTGTCTCCCACGCCCTGGAAGTCTGACAAGCATGTTCTGTGTCTGCCTCTGTCCTCAGAGGAGGTCATCCTGTTTGGAGCCAGTCAGGGTTATACAACAGCTCAGGACGATGTGTCCGGGGTTACGAGGTGTGCCTTGGGAGAAGAGTTCCAGGTCATGCATGGGGAAAGGCTGGGTTGAGCAAAGGTGTGCAGGTTTCTTCCCAGAGACGCAGCTGTGCTGGTGGGTGGGAGTCCTCTAAGAAGGCATCAGAGTCCACAGTGTCCACATTCTTTGGTCATGGGACCCTCTTCCTTGGAGTGTCCAATGGGACCTGGGTTCTGAGGAATGCCCTCTGGGAAATGCCGGCCCAACAGCACTCAGCTGGGCGGCAAAACAGCTGTTTTATATCCAGAAAACTTTGTGAGCTGCGCCTGAGTCCAGGCCTTGCTATTCCTGAGATAGAAAACGGAGTCAGATGCAGAGCTGTCCAACGTCCAGACAGGAGATCATAAGGTTGTTTGGTTCCCGGCTCCTCAAGTTGGGGAATTGAAACTGTTTTTCTGTTTGAGGCCAAAAGCCCTGATGAAGCGGCCATTTGTGCATGTGCCCTGTTGGGAGCTGGGCTGGTCCTCCCCTCTGTGATGAGGGCTGTTACTCAGACAGATGCCAAGGGGCCTGGGATCTCCTCCCTCCCCCTTTCCCAGTGCTCAGCCTTGGTGCTCTTTCAGGCAAAGAGCACTGAACCTCAGAGCCTCTGAGGTCTGAGAGACAGTCCAGAAGCATTGCGCATGGATGCTTGGGTGAGAGGAGAAAATCTCTCCTCCAAGAGGGCTTAGAGAGCCCGGGAGAAGCAGGGTCGCCCATTCAGCCCAGAGGGACAGGCCTGAAGGAGGAATAGGGAGCAAAGCTGTGGGACCCAGCCCCTCTCTGTGACCCCACTGGCCAGGGGTCTGCAGGGGCTCTCCCTTGAGGCTTCTGTCTAATGCCAGGTAGCTGCACTGTGACCAACGTCTAGTCAAGTCCTGACCCTTGGGGAAGAGGAAGAGGTGCTCATTTGGCCTCACCAGGTGAGGCCTGTTCTAGTCCTGGCTTCACTTGGGCCAGAAGGGAGGCAGTGGTGGAGCCAGGTCAGGCCCAGAAGAAAGCCTGAGGACCCAGACCCCAGCGGGCCAGTGGGCAGTTAGCTGTGGCCCCCGGGGGCAGTGGGAAGGTAGCAGAGGACCTGCCTGGAACAGTGGTTCTTTGACCCTCCCAGAGCAGAGTTAGAACTCACAGCAAAAACTCGAGTACGTTGAGGCTCCCAATGTCAGGAAGCAGTTTCTGTGGCACTTCTGTGAGCTCAGGGGGCCTGGGCTCGGTGACCCAGGAGAACAGGCCCCTCTTCTGTGAAGCCGTTGTGCTCATTGACCTGTGTTCCTTTTCCAG
Seq C2 exon
GCAGTAGTGAGAGCTCAGAGTTTAGTGAAGAGATGTCTTCAGGGCTGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136828:ENST00000259351:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=0.778
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains