BtaINT0122032 @ bosTau6
Intron Retention
Gene
ENSBTAG00000023843 | RALGPS1
Description
Bos taurus Ral GEF with PH domain and SH3 binding motif 1 (RALGPS1), mRNA. [Source:RefSeq mRNA;Acc:NM_001193100]
Coordinates
chr11:97952221-97954570:+
Coord C1 exon
chr11:97952221-97952378
Coord A exon
chr11:97952379-97954518
Coord C2 exon
chr11:97954519-97954570
Length
2140 bp
Sequences
Splice sites
5' ss Seq
TCGGTAAGC
5' ss Score
9.86
3' ss Seq
GATCTATGTTCCTTTTCCAGGCA
3' ss Score
10.45
Exon sequences
Seq C1 exon
TATGATGTGTCAGTTGAGTGTAGTTGAGAGTAAAAGCGCGACATTCCCGTCGGAGAAAGCGAGGCACCTGCTGGATGACAGTGTCCTAGAGCCCCGCAGCCCCCGCAGGGGCCTCGCCCTTGCCTCCTCCTCCGCCGTCACCAACGGACTCTCCCTCG
Seq A exon
GTAAGCGTCCCCGGCCTGCACACGGCAGCGGGTGGGCCACGGCCCGGCGTGTCTGTGTCTGTGTCCGTCACTGCAGTGCCCGGGGGCCCCGCACCCCACCCCCGCATAGAGGGCTCCCTACAGGCATCGCCAGGGCCAAAGAGGCCTTTGCTTCCCGGTCTCCACTTCACAAAGGGCCATGGGTCCTCATCCTGCCAGTGGCTCTGAGAGGGGCAAGAAATAGGGGACAGACACGTACCTGAGACCCACTGTCCTTGGCAGGCGACTGCCAAAGCCTTGTGGCTGCTGCCCCCGCGGGGCTCCGTCCCTGGGGAGCCACAAACCCTGGCCCACAGGGCAAAGGAGGAGATTCTGCCTGGGGACAGCAGCAAGGCGGCCCCGGGGTGCTCCCCATGCGCTTGTCTTCATACCAAGAAGCCAAAATAAGGGAGGATGAAAAATTGACCTTCTGGGATGAAAATGTATGTCTGAACTCCAGCCAGAAATGGTGCTTATATCAATAGAAAGACAGAGGCTGAGCTGCTGGGGCCAGGGTTGGCAGGGGTGGTATCAGACCTAAGGGTGGCAGTGAGCTCTGGTCACAGGCCCAGCCCCTGTGGAGTCCAGGCCACCCGGTCATTTCTGCCGTCAGACAGGTGTACTGTCCACTGCTGTCCTTTCAGTGTGCCATGCTTCTGTAGTCTGTGTGTCCATGTGTCTGTCCTAACAGGGAGCCCTCCCGGGGCTGGCAGCAGGTTAGACAGAGGCCAGTAGGGTGGAGGGCCCCAGCGCATGGGAAAGAAGAGGTAGTACAGGCAGGAAAATCATGCGGGAATCTCGCATCCCGTGAAACGGGGCCAGTCTCTGAGGCAGCGTCGCCGCGAGGGGGCACCTGGCTCCCACTTCCTAGAAAGCATGTGACAAGCAAGGCCTGTGTCTGCTGTCCGTCCAGGGAGGAGATCCTCTCCTTGGACCCGGCCAGGGATTTCTGCCAGCTCGGGACAGTGTAGCCCAGGCTTCCTAGGTGCGCCTGGGGAGAAGAGTTCAGGGTCTGTGAGTTGGGGAAAGGCTGGATTAAACCAGGGCAGTAGGTCTCTTCCCAGAAACTGGACCATACTGATGGGCATCGTGGGTCTCCCAGGAGGCAGCTGAGCCCGAAGGTTCCCACACTGTCTGGGCCGGAACCCTCCTCCTTGGAGAATCCCATGGGGTGGGGTTCTGAACCTGCGTGGGAAATGCCGGCCCGAGAGCATTGGGCTGAGCAGTAGAACAGCTCTTTTACATCCAGGAAACTTTCTGAGCTGTGCCTGAGCCCAAGCCTTGCTATTCCTGAGACAGAAACCAAGTCAGACGCTGTGCTGTCCGGCATCCAGGCGGGAGATCCCCAGGCGCTGCGGCTCTCAGCTTCTCCACTCCGAACACTCAGAGGTTTTTCTGTTTGGAGCTGGAGCCTGGGAGCTCGCTGCCCTGTGTGCCTGTGCCCTGCTTGAGACTGAACTGGTCCTTGTGTCCTGGAACTGCCAAGGGGCCTGGGACCTCCCCCTCTTTCTCCCCACTCGCACTGCCCGGCTGTGGTGCCAGCAAGGCAGCCCAGGCAGAGAGGGCAGAACCCAGGCGCCTCCAAGGAACATCTCTCTGCTTCCTTGTGGCTGAAGCTGGGCCTTGGTGAGTCCCAGTCAGCCTCGGGGTGCAGGCCAGGGGAAAGCTGAGTCCTCTGTGTGCACACTGCCCCGGGCTCTGAAAGGGTGCTCCGTGGGGGCCTCTGTCCAGTGCTAGGTAGCTGCTCCGTGGCCCGCATTTAGTCCAGCCCTGACCTTTGGAGGGAGAAGTTGTCATCTGGCCCCTGGAGGGCAGGGGTGGAGCCTGTGGAAGACAGAGTCCTAAGGGTCCTGATCCCAGGGGACTGGTGTGTGGGCAGCCGCAGCGCTGAGCGGGCAGGGAAGGCAGAGGAGGGCCCACCTGGGAACCGTGGGACGGGGTGGGCCGAGTGTCAGAGCAGCAGCAGAGCAGAGCCCAAGCCACACTGACACCCCCGGGGTCAGGCGGTGTCCCTCCAGCATGTTCGTGCAGCTTGGGGCCTGGGCCCGGCGGAGAACAGGCCGCTCTAGTGGCCCCACTCCTGCGAGGCCGCCCCGCTCACTGATCTATGTTCCTTTTCCAG
Seq C2 exon
GCAGTAGTGAGAGCTCAGAGTTTAGTGAAGAGATGTCTTCAGGGCTGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000023843:ENSBTAT00000061364:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.537 A=NA C2=0.778
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development