DreINT0124240 @ danRer10
Intron Retention
Gene
ENSDARG00000068370 | ralgps1
Description
Ral GEF with PH domain and SH3 binding motif 1 [Source:ZFIN;Acc:ZDB-GENE-070720-16]
Coordinates
chr8:32921172-32921680:-
Coord C1 exon
chr8:32921526-32921680
Coord A exon
chr8:32921221-32921525
Coord C2 exon
chr8:32921172-32921220
Length
305 bp
Sequences
Splice sites
5' ss Seq
TGGGTAATG
5' ss Score
5.68
3' ss Seq
TTTCCTCTGTCCCTCTGCAGGCA
3' ss Score
13.47
Exon sequences
Seq C1 exon
TATGATGTGTCAGTTTGGTGTTGTGGAGAGTAAAAGTGCAACATTTCCTGAAAAGGAAAAGGCTCGACACCTACTGGATGACAGCTTCTTAGAGTCTCACAGTCCTGTCAGAAACCATACACATGATTCAGTATTCACCAACGGCATATCACTGG
Seq A exon
GTAATGCAGTTAATTCCTGTTTTACACCCTTTTCATAAAGCACAAGTATCCGTGTCCTTGTTTTAAAGCATTTTATTTACTTCTACATCACTACTGTGTTGGAATATTTTTGCATCAAAAGCGAATGATTTCAACACTAGATGGCGGCAGTGTTAAATCATTTGTGCAGTGGGTTATTTTCTTTTGCAGCCCAGCAGACTTGAAATCTTTACCATGTGATGTTCCTGGGATTGTTTATTTTAGTTATTGAAGGAGAAAACAAATAATTGAATCTTACTCTTTATTTTTCCTCTGTCCCTCTGCAG
Seq C2 exon
GCAGTAGAGAGAGCTCTTTTAGTGATGAATTATCAAGTACTGTTGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068370:ENSDART00000098840:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.415 A=NA C2=0.118
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]