GgaINT0124699 @ galGal4
Intron Retention
Gene
ENSGALG00000000906 | RALGPS1
Description
Ral GEF with PH domain and SH3 binding motif 1 [Source:HGNC Symbol;Acc:HGNC:16851]
Coordinates
chr17:10355236-10356087:+
Coord C1 exon
chr17:10355236-10355387
Coord A exon
chr17:10355388-10356035
Coord C2 exon
chr17:10356036-10356087
Length
648 bp
Sequences
Splice sites
5' ss Seq
TAGGTAGAG
5' ss Score
3.22
3' ss Seq
CTGTTCTCCACTTTTTCTAGATA
3' ss Score
9.21
Exon sequences
Seq C1 exon
CATGATGTGTCAGTTCAGTGTGGTGGAGAGCAAAAGCGCCACTTTCCCGACGGAGAGGCCGCGCCACCTCCTGGATGACAGCGTCCTGGAGTCACAGAGCCCGACCCGCAGCGACATGCTGAACTCACTTTTCACTAATGGCATCTCCATAG
Seq A exon
GTAGAGACTGAGCGGGGGACTGACTCACCTGGTTTTCCCTCCCAGTTCTCTAGTAAAGTAATAGAGATATCTAAAATCAAGGAATTGGGAAGCTTAGTAGCTCCTGGGCAAAGATTGTGCTACTGTATAGAAGAAAGGAGATCAGAGTTACTACTCAGTTACTTAATGGACTTTGTTTCAACTTTCTTGTATCACTCTTGGGCAAATGAAAATGGAGTTAAATAGCTATGTCAGGGAAGGACAGACAGACAGGTCAAAGGCTTATATGAGAAATAGGGGCTATTGTTGTGAATTCCATCTCATTGATTTGTTACGACTCCTAGTAGCAGCTGGCATACCCTCTGTTCCAGGTGTGCATGCTTGTTACAAACAGTGATATCGTGTCTAATAACTTCAGTTGACTTGCAGATGTTATGGTAGAAATATTGTCTTAAAGAGCAATTAGATTTTGTGTTTCTGAAGTATTCAGCTTTTAATGGGGAAACAGCATAATGAAAATAAAAGTAATGTGCAGGTTTCTGGTATTTAAACACATCAGCAACTGTGAATTTGTTCATCAGTGATGCATCAAAAATGAGAGGGCAGATATAAGTCTCTTCTGATTTTAGATGGTTTTCTTACTCCTTTTCTGTTCTCCACTTTTTCTAG
Seq C2 exon
ATAGCAGTGAAAGCTCGGAATTTAGTGAGGAGCAGTCATCAGGGCTTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000906:ENSGALT00000001330:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.423 A=NA C2=0.556
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTCAGTTCAGTGTGGTGG
R:
TTTCAAGCCCTGATGACTGCT
Band lengths:
198-846
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]