MmuINT0071280 @ mm9
Intron Retention
Gene
ENSMUSG00000049897 | Gm711
Description
predicted gene 711 [Source:MGI Symbol;Acc:MGI:2685557]
Coordinates
chr2:26806940-26807270:+
Coord C1 exon
chr2:26806940-26807068
Coord A exon
chr2:26807069-26807141
Coord C2 exon
chr2:26807142-26807270
Length
73 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
ACAAGGCTTGTTCTTTGTAGGCT
3' ss Score
5.74
Exon sequences
Seq C1 exon
TTGTCACTGTGGACAAAGAGCCCTTGGAGCAGCTCTCTGGCATGGTCACCTGGGTGCTGGCTACTCATCCGGAGGACGTGGAAATAGCAGAGGCTGGCTGTGCGGTGCTCTGGCTGCTGTCCTTGTTGG
Seq A exon
GTGAGTAGCCCGAGGCCTTGGTAACAGGGAGGGTGACCCTGGACACACAGACAACAAGGCTTGTTCTTTGTAG
Seq C2 exon
GCTGCATAAAGGAGAGTCAGTTTGAGCAGGTGGTAGTGCTGCTCCTGAGAAGCATCCAGCTGTGCCCTGGCAGAGTACTGCTGGTGAACAATGCATTCCGTGGCTTGGCCAGCCTCGCAAAGGTGTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049897-Gm711:NM_198628:15
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGACAAAGAGCCCTTGGAG
R:
TGCTTCTCAGGAGCAGCACTA
Band lengths:
175-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: