HsaINT1043216 @ hg38
Intron Retention
Gene
ENSG00000198870 | STKLD1
Description
serine/threonine kinase like domain containing 1 [Source:HGNC Symbol;Acc:HGNC:28669]
Coordinates
chr9:133403700-133404048:+
Coord C1 exon
chr9:133403700-133403828
Coord A exon
chr9:133403829-133403919
Coord C2 exon
chr9:133403920-133404048
Length
91 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
3' ss Seq
AGCCCGGCCCCTTTCTGCAGGCT
3' ss Score
8.08
Exon sequences
Seq C1 exon
GTATCATTGTGAACAAGGCCCCCTTGGAGAAGGTCCCGGACCTCATCAGCCAGGTGTTGGCCACCTACCCTGCGGATGGGGAAATGGCAGAAGCCAGCTGCGGAGTCTTCTGGCTGCTGTCCCTGCTGG
Seq A exon
GTGAGCTGGGTGGGCGCCCTGGGCCCCTGGGGCTGGGAGGGGTGGGCCTCATGGCACAGCAGGCACAAGGCAGCCCGGCCCCTTTCTGCAG
Seq C2 exon
GCTGCATCAAGGAGCAGCAGTTTGAACAAGTGGTGGCGCTGCTCCTGCAAAGCATCCGGCTGTGCCAGGACAGAGCCCTGCTGGTGAACAATGCCTACCGGGGACTGGCCAGCCTGGTGAAGGTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198870:ENST00000371957:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTCATCAGCCAGGTGTTG
R:
ATTGTTCACCAGCAGGGCTCT
Band lengths:
183-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains