GgaINT0125426 @ galGal3
Intron Retention
Gene
ENSGALG00000003175 | C9orf96
Description
NA
Coordinates
chr17:7570661-7571829:+
Coord C1 exon
chr17:7570661-7570789
Coord A exon
chr17:7570790-7571700
Coord C2 exon
chr17:7571701-7571829
Length
911 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
3' ss Seq
TTTTTATTTTTATTTTAAAGGTT
3' ss Score
10.82
Exon sequences
Seq C1 exon
AGAACAATGTAGACCAAGTAATGCTGCAAAGTGCTGTCCCCGTTATCACCGCAGTCATTCAAGAGCACCTCCAGAATGGAGCAGTTCTGAAGTCAGCTTGCTCAGCTTTGTGGGCGCTGTCACTGCAAG
Seq A exon
GTGTGTTTTCCCAAGGTATTTTCACTGTCTCCTGTGCATGGGAAAGGCCAAACACTTCTGTCAGTTGGTTCTTGAAATACAGACTGCTTGGCCTCAGCAGGCTCTGCAGGTGGCAGCAGTTAGAAACCTATCCTCTTAATAAACTCTCCTTGTGTTCGCTCCTGATGCTGTAATGAAGCTGTTTTGGAAGAACCATGGCATTTATGTAACTAGATACTGTTGATGTGTGGATACTGCAAGGATCCACAGCTACAGCAGTATATGTTGTGCAGAGCACCCTGCCTGGCTTCTCTTGAGACCAAGAATCCCACTTGTGTTACTCTGTTATGTGCTACTAGTTTGAACACGCTCTTATCATGATGTGTGTACACATACAGGTTTTGTTCAGGTTTGATTGTTTTGGGCCATCTGCTTTGTAATTAGGCAACATTTCAGATGAAAAAGTAAAATGTGTATCTCTTTCTTCATCATGCACACAAATGAATGTATCTTTGCAATACTATTCTGTTTCTCCCACGTGCAAGAATATTACCATATGTTTACCTACTGCCCTGTGCTCCTACCATTCTTTCCCAGAAGAGGAGCTGAAAAGGACACATGGAGCCGTGCACTCTCTTCTTCTTTCTAGTGCCTACCAGTAGAATATGTTGAGTGTTTGGGACTCTCCATTCCTTTTAGCTTGGAGAATGCAAGGAAATCTTGACATAAAAGACATATCAGATTTTTTTTCCTGGGCTTCTAGAGGAACTCACAGTAAGACTTTATTAGGCCTATATTACTGTTACATGGGCTTTCACACCCTTTCTTTTGATGCATGGTTAAATGTCCCTTCAAAAACAGGAGGTAGAAATTGAGATGAGTATTTAAAACATTAGTGTTTTGATATTTTTTTTTTTATTTTTATTTTAAAG
Seq C2 exon
GTTTTTTAACTGAAAATGACTATGAGCCCACAACAGTGCTTCTGATGGATGCACTCAGGATGAACCTGGAAAAACCAATGCTGGTGAATAATACCTGCCTGGCATTAGCAAGCCTTCTAAGACTATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003175:ENSGALT00000005036:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAATGTAGACCAAGTAATGCTGCA
R:
CAGATAGTCTTAGAAGGCTTGCT
Band lengths:
255-1166
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]