GgaINT0125426 @ galGal4
Intron Retention
Gene
ENSGALG00000003175 | STKLD1
Description
serine/threonine kinase-like domain containing 1 [Source:HGNC Symbol;Acc:HGNC:28669]
Coordinates
chr17:6898256-6899424:+
Coord C1 exon
chr17:6898256-6898384
Coord A exon
chr17:6898385-6899295
Coord C2 exon
chr17:6899296-6899424
Length
911 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
3' ss Seq
TTTTTATTTTTATTTTAAAGGTT
3' ss Score
10.82
Exon sequences
Seq C1 exon
AGAACAATGTAGACCAAGTAATGCTGCAAAGTGCTGTCCCCGTTATCACCGCAGTCATTCAAGAGCACCTCCAGAATGGAGCAGTTCTGAAGTCAGCTTGCTCAGCTTTGTGGGCGCTGTCACTGCAAG
Seq A exon
GTGTGTTTTCCCAAGGTATTTTCACTGTCTCCTGTGCATGGGAAAGGCCAAACACTTCTGTCAGTTGGTTCTTGAAATACAGACTGCTTGGCCTCAGCAGGCTCTGCAGGTGGCAGCAGTTAGAAACCTATCCTCTTAATAAACTCTCCTTGTGTTCGCTCCTGATGCTGTAATGAAGCTGTTTTGGAAGAACCATGGCATTTATGTAACTAGATACTGTTGATGTGTGGATACTGCAAGGATCCACAGCTACAGCAGTATATGTTGTGCAGAGCACCCTGCCTGGCTTCTCTTGAGACCAAGAATCCCACTTGTGTTACTCTGTTATGTGCTACTAGTTTGAACACGCTCTTATCATGATGTGTGTACACATACAGGTTTTGTTCAGGTTTGATTGTTTTGGGCCATCTGCTTTGTAATTAGGCAACATTTCAGATGAAAAAGTAAAATGTGTATCTCTTTCTTCATCATGCACACAAATGAATGTATCTTTGCAATACTATTCTGTTTCTCCCACGTGCAAGAATATTACCATATGTTTACCTACTGCCCTGTGCTCCTACCATTCTTTCCCAGAAGAGGAGCTGAAAAGGACACATGGAGCCGTGCACTCTCTTCTTCTTTCTAGTGCCTACCAGTAGAATATGTTGAGTGTTTGGGACTCTCCATTCCTTTTAGCTTGGAGAATGCAAGGAAATCTTGACATAAAAGACATATCAGATTTTTTTTCCTGGGCTTCTAGAGGAACTCACAGTAAGACTTTATTAGGCCTATATTACTGTTACATGGGCTTTCACACCCTTTCTTTTGATGCATGGTTAAATGTCCCTTCAAAAACAGGAGGTAGAAATTGAGATGAGTATTTAAAACATTAGTGTTTTGATATTTTTTTTTTTATTTTTATTTTAAAG
Seq C2 exon
GTTTTTTAACTGAAAATGACTATGAGCCCACAACAGTGCTTCTGATGGATGCACTCAGGATGAACCTGGAAAAACCAATGCTGGTGAATAATACCTGCCTGGCATTAGCAAGCCTTCTAAGACTATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003175:ENSGALT00000005036:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAATGTAGACCAAGTAATGCTGCA
R:
CAGATAGTCTTAGAAGGCTTGCT
Band lengths:
255-1166
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]