MmuEX6102111 @ mm9
Exon Skipping
Gene
ENSMUSG00000027018 | Hat1
Description
histone aminotransferase 1 [Source:MGI Symbol;Acc:MGI:96013]
Coordinates
chr2:71247045-71258411:+
Coord C1 exon
chr2:71247045-71247120
Coord A exon
chr2:71248200-71248320
Coord C2 exon
chr2:71258232-71258411
Length
121 bp
Sequences
Splice sites
3' ss Seq
GTTTTTGCTTTTTATCTCAGTGA
3' ss Score
7.09
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
TTCGTTTTCCTGAAGATCTTGAGAATGACATTAGAACTTTCTTTCCTGAATATACCCATCAGCTCTTTGGGGATGA
Seq A exon
TGAAACTGCTTTCGGTTACAAGGGCCTGAAGATCTTGCTGTACTATATTGCTGGTAGCCTGTCAACACTGTTCCGTGTTGAATATTCATCTAAAGTTGATGAGAACTTTGATTGTGTGGAG
Seq C2 exon
GCAGATGATGTTGAAGGCAAAATCAGACAAATCATTCCACCTGGGTTTTGCACAAACACAAATGATTTTCTTTCCTTGCTGGAAAAGGAAACTAATTTCAAGCCTTTTGGAACCCTCCTCCATACATACACAGTTCCTAGTCAGACAGGAGGTGAAACCTTTACTTTCCAGATCCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027018-'5-7,'5-3,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF103944=Hat1_N=FE(15.4=100)
A:
PF103944=Hat1_N=FE(24.7=100)
C2:
PF103944=Hat1_N=FE(36.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTTTTCCTGAAGATCTTGAGA
R:
TGTGGATCTGGAAAGTAAAGGT
Band lengths:
253-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: