MmuEX6102112 @ mm9
Exon Skipping
Gene
ENSMUSG00000027018 | Hat1
Description
histone aminotransferase 1 [Source:MGI Symbol;Acc:MGI:96013]
Coordinates
chr2:71227960-71248320:+
Coord C1 exon
chr2:71227960-71228055
Coord A exon
chr2:71247045-71247120
Coord C2 exon
chr2:71248200-71248320
Length
76 bp
Sequences
Splice sites
3' ss Seq
ATATTTCTTCTTTTGAACAGTTC
3' ss Score
7.5
5' ss Seq
TGAGTAAGT
5' ss Score
8.82
Exon sequences
Seq C1 exon
CCTTGGAGAAATTTCTGGTGGAGTATAAGAGTGCCGTGGAGAAGAAACTAGCAGAGTACAAGTGTAACACCAACACAGCAATCGAGCTGAAACTAG
Seq A exon
TTCGTTTTCCTGAAGATCTTGAGAATGACATTAGAACTTTCTTTCCTGAATATACCCATCAGCTCTTTGGGGATGA
Seq C2 exon
TGAAACTGCTTTCGGTTACAAGGGCCTGAAGATCTTGCTGTACTATATTGCTGGTAGCCTGTCAACACTGTTCCGTGTTGAATATTCATCTAAAGTTGATGAGAACTTTGATTGTGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027018-'3-3,'3-2,5-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF103944=Hat1_N=PU(7.4=36.4)
A:
PF103944=Hat1_N=FE(15.4=100)
C2:
PF103944=Hat1_N=FE(24.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTGGAGAAATTTCTGGTGGAGT
R:
ACACGGAACAGTGTTGACAGG
Band lengths:
174-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: