HsaEX0029269 @ hg38
Exon Skipping
Gene
ENSG00000128708 | HAT1
Description
histone acetyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:4821]
Coordinates
chr2:171925537-171953001:+
Coord C1 exon
chr2:171925537-171925641
Coord A exon
chr2:171946708-171946783
Coord C2 exon
chr2:171952881-171953001
Length
76 bp
Sequences
Splice sites
3' ss Seq
TTTTTTGTCCCTTGAAACAGTTC
3' ss Score
8.09
5' ss Seq
TGAGTAAGT
5' ss Score
8.82
Exon sequences
Seq C1 exon
GATTTGGTGCTATGGAGAAATTTTTGGTAGAATATAAGAGTGCAGTGGAGAAGAAACTGGCAGAGTACAAATGTAACACCAACACAGCAATTGAACTAAAATTAG
Seq A exon
TTCGTTTTCCTGAAGATCTTGAAAATGACATTAGAACTTTCTTTCCTGAGTATACCCATCAACTCTTTGGGGATGA
Seq C2 exon
TGAAACTGCTTTTGGTTACAAGGGTCTAAAGATCCTGTTATACTATATTGCTGGTAGCCTGTCAACAATGTTCCGTGTTGAATATGCATCTAAAGTTGATGAGAACTTTGACTGTGTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000128708_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF103944=Hat1_N=PU(28.6=33.3)
A:
PF103944=Hat1_N=FE(15.4=100)
C2:
PF103944=Hat1_N=FE(24.7=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGCTATGGAGAAATTTTTGGT
R:
ACGGAACATTGTTGACAGGCT
Band lengths:
177-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development