BtaEX0016686 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010118 | HAT1
Description
Bos taurus histone acetyltransferase 1 (HAT1), mRNA. [Source:RefSeq mRNA;Acc:NM_001034347]
Coordinates
chr2:24634104-24644520:-
Coord C1 exon
chr2:24644363-24644520
Coord A exon
chr2:24637560-24637635
Coord C2 exon
chr2:24634104-24634224
Length
76 bp
Sequences
Splice sites
3' ss Seq
TTTTTTATTCTTTTAAACAGTTC
3' ss Score
9.03
5' ss Seq
TGAGTAAGT
5' ss Score
8.82
Exon sequences
Seq C1 exon
GTTTGATTAATTAAATCACTTCCAACTAGTCTTTTTAAAATCCTGTTTCTTAGGATTTGGTGCTATGGAGAAGTTTTTGGTTGAATACAAGAGTGCAGTTGAGAAGAAACTGGCTGAGTACAAATGTAACACCAACACAGCAATTGAACTGAAATTAG
Seq A exon
TTCGTTTTCCTGAAGATCTTGAGAATGACATTAGAACTTTCTTTCCTGAGTATACCCATCAACTCTTTGGGGATGA
Seq C2 exon
TGAAACTGCTTTTGGTTACAAGGGTCTGAAGATCTTGTTATATTATATTGCTGGTAGCCTATCAACAATGTTCCGTGTTGAATATGCATCTAAAGTTGATGAGAACTTTGACTGTGTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010118_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF103944=Hat1_N=PU(7.4=37.5)
A:
PF103944=Hat1_N=FE(15.4=100)
C2:
PF103944=Hat1_N=FE(24.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGCTATGGAGAAGTTTTTGGT
R:
ACACGGAACATTGTTGATAGGCT
Band lengths:
179-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development