MmuEX6102112 @ mm10
Exon Skipping
Gene
ENSMUSG00000027018 | Hat1
Description
histone aminotransferase 1 [Source:MGI Symbol;Acc:MGI:96013]
Coordinates
chr2:71389903-71410263:+
Coord C1 exon
chr2:71389903-71389998
Coord A exon
chr2:71408988-71409063
Coord C2 exon
chr2:71410143-71410263
Length
76 bp
Sequences
Splice sites
3' ss Seq
ATATTTCTTCTTTTGAACAGTTC
3' ss Score
7.5
5' ss Seq
TGAGTAAGT
5' ss Score
8.82
Exon sequences
Seq C1 exon
CCTTGGAGAAATTTCTGGTGGAGTATAAGAGTGCCGTGGAGAAGAAACTAGCAGAGTACAAGTGTAACACCAACACAGCAATCGAGCTGAAACTAG
Seq A exon
TTCGTTTTCCTGAAGATCTTGAGAATGACATTAGAACTTTCTTTCCTGAATATACCCATCAGCTCTTTGGGGATGA
Seq C2 exon
TGAAACTGCTTTCGGTTACAAGGGCCTGAAGATCTTGCTGTACTATATTGCTGGTAGCCTGTCAACACTGTTCCGTGTTGAATATTCATCTAAAGTTGATGAGAACTTTGATTGTGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027018-'3-7,'3-6,8-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF103944=Hat1_N=PU(13.2=36.4)
A:
PF103944=Hat1_N=FE(15.4=100)
C2:
PF103944=Hat1_N=FE(24.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTGGAGAAATTTCTGGTGGAGT
R:
ACACGGAACAGTGTTGACAGG
Band lengths:
174-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types