DreEX6034808 @ danRer10
Exon Skipping
Gene
ENSDARG00000034916 | hat1
Description
histone acetyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-040912-99]
Coordinates
chr9:3314313-3321214:+
Coord C1 exon
chr9:3314313-3314388
Coord A exon
chr9:3314764-3314884
Coord C2 exon
chr9:3321035-3321214
Length
121 bp
Sequences
Splice sites
3' ss Seq
GTCTTTTTTTATTTGCACAGTGA
3' ss Score
7.07
5' ss Seq
GAGGTACAG
5' ss Score
6.62
Exon sequences
Seq C1 exon
TGAGGTTCCCGGAGGATATAGATGATGAAAGCACAACATTTCACCCGGAGTTCAGTCATCAGCTGTTTGGAGATGA
Seq A exon
TGAAGTGGCGTTTGGCTACAAGGGTCTTCAGATCCAGCTTTACCAGAGCGCAGGAAACCTCAACACCCTGTTCAAAGTCAAGTACACTGCCAGGGTCACAGACAAGTTTGACTGCGTTGAG
Seq C2 exon
CCAGATGATGTGGAGGGTAAAATCCGAGAGATCATTCCTGCTGGTTTCTGCTGTAACACAGACGACTTCATCTCTGTCCTGGAGAAAGAGGCCAACTTTAAACCCTTCGGCAGCCTGCAGCACACCTACAAAGTTCACAATGTGGAGGCAGGAGAGGATCTCACCTACCAGATACACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000034916-'6-5,'6-3,7-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF103944=Hat1_N=FE(15.4=100)
A:
PF103944=Hat1_N=FE(24.7=100)
C2:
PF103944=Hat1_N=FE(36.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAGGATATAGATGATGAAAGCACA
R:
TGTGTATCTGGTAGGTGAGATCCT
Band lengths:
245-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]