GgaEX1028063 @ galGal3
Exon Skipping
Gene
ENSGALG00000009525 | HAT1
Description
NA
Coordinates
chr7:19323299-19330208:-
Coord C1 exon
chr7:19330133-19330208
Coord A exon
chr7:19328312-19328432
Coord C2 exon
chr7:19323299-19323478
Length
121 bp
Sequences
Splice sites
3' ss Seq
GTGCTTTTTTCCTTCCTCAGTGA
3' ss Score
9.35
5' ss Seq
GAGGTAAAG
5' ss Score
8.27
Exon sequences
Seq C1 exon
TTCGCTTTCCTGAGGATTTGGAGGATGACAACACAACATTTAACCCAGAGTATAGCCATCAAGTGTTTGGTGATGA
Seq A exon
TGAAGTTGCCTTTGGTTACAAGGGACTGAAGATTCTCTTATACTACATCGCTGGTAACCTGTCAACTCTCTTCCGCATTGAATATACATCTAAAGTTAATGAGAAGTTTGACTGTGTGGAG
Seq C2 exon
GCAGATGATGTTGAAAGTAAAATTAGAGAAATTATTCCTCCTGGCTTCTGTACAAACACAGATGACTTTGTCTCTCTGTTGGAAAAGGAGGTCAACTTTAAGCCCTTTGGAATGCTGCTGCACACATATTCTGTTCATAACGAGGAAGCTGGTGAAGACATTACATATCAGATATATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009525-'7-7,'7-3,10-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF103944=Hat1_N=FE(15.4=100)
A:
PF103944=Hat1_N=FE(24.7=100)
C2:
PF103944=Hat1_N=FE(36.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCGCTTTCCTGAGGATTTGGA
R:
ATGTAATGTCTTCACCAGCTTCCT
Band lengths:
242-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]