RnoEX6017385 @ rn6
Exon Skipping
Gene
ENSRNOG00000001524 | Hat1
Description
histone acetyltransferase 1 [Source:RGD Symbol;Acc:1305716]
Coordinates
chr3:58041790-58051087:+
Coord C1 exon
chr3:58041790-58041865
Coord A exon
chr3:58042688-58042808
Coord C2 exon
chr3:58050908-58051087
Length
121 bp
Sequences
Splice sites
3' ss Seq
TTTTTGCTTTTTCATCTCAGTGA
3' ss Score
7.63
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
TTCGTTTTCCTGAAGATCTTGAGAATGACATTAGAACTTTCTTTCCTGAATATACCCATCAACTCTTTGGGGATGA
Seq A exon
TGAAACTGCTTTTGGTTACAAGGGCCTGAAGATCTTGTTGTACTATATTGCTGGTAGCCTGTCAACTATGTTCCGTGTTGAATATGCATCTAAAGTTGATGAGAACTTTGATTGTGTGGAG
Seq C2 exon
GCAGATGACGTTGAAGGCAAAATCAGACAAATCATTCCACCTGGGTTTTGCACAAACACAAATGATTTTCTTTCCTTGCTGGAAAAGGAAGCTGATTTCAAGCCATTTGGAACCCTCCTCCATACATACTCAGTTCCTAGTCCAACAGGAGGAGAAAACTTTACTTTTCAGATATACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001524-'4-8,'4-6,6-8=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF103944=Hat1_N=FE(15.4=100)
A:
PF103944=Hat1_N=FE(24.7=100)
C2:
PF103944=Hat1_N=FE(36.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCGTTTTCCTGAAGATCTTGAGA
R:
AAGTAAAGTTTTCTCCTCCTGTTGGA
Band lengths:
242-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]