RnoEX0040948 @ rn6
Exon Skipping
Gene
ENSRNOG00000001524 | Hat1
Description
histone acetyltransferase 1 [Source:RGD Symbol;Acc:1305716]
Coordinates
chr3:58042688-58051443:+
Coord C1 exon
chr3:58042688-58042808
Coord A exon
chr3:58050908-58051087
Coord C2 exon
chr3:58051322-58051443
Length
180 bp
Sequences
Splice sites
3' ss Seq
CTTTGTTTTCTATTCTTCAGGCA
3' ss Score
9.66
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
TGAAACTGCTTTTGGTTACAAGGGCCTGAAGATCTTGTTGTACTATATTGCTGGTAGCCTGTCAACTATGTTCCGTGTTGAATATGCATCTAAAGTTGATGAGAACTTTGATTGTGTGGAG
Seq A exon
GCAGATGACGTTGAAGGCAAAATCAGACAAATCATTCCACCTGGGTTTTGCACAAACACAAATGATTTTCTTTCCTTGCTGGAAAAGGAAGCTGATTTCAAGCCATTTGGAACCCTCCTCCATACATACTCAGTTCCTAGTCCAACAGGAGGAGAAAACTTTACTTTTCAGATATACAAG
Seq C2 exon
GCTGACATGACATGTAGAGGCTTTCGAGAATATCATGAAAGGCTTCAGACCTTTTTGATGTGGTTTATTGAAACTGCTAGCTTTATTGACGTGGATGATGAAAGATGGCACTACTTTCTAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001524-'6-9,'6-8,7-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF103944=Hat1_N=FE(24.7=100)
A:
PF103944=Hat1_N=FE(36.4=100)
C2:
PF103944=Hat1_N=PD(14.2=56.1),PF135081=Acetyltransf_7=PU(6.6=14.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACTGCTTTTGGTTACAAGGGC
R:
ACTAGAAAGTAGTGCCATCTTTCA
Band lengths:
242-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]