BtaEX0016684 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010118 | HAT1
Description
Bos taurus histone acetyltransferase 1 (HAT1), mRNA. [Source:RefSeq mRNA;Acc:NM_001034347]
Coordinates
chr2:24624970-24634224:-
Coord C1 exon
chr2:24634104-24634224
Coord A exon
chr2:24625355-24625534
Coord C2 exon
chr2:24624970-24625091
Length
180 bp
Sequences
Splice sites
3' ss Seq
CTTTAATCTCCATTCTTTAGGCA
3' ss Score
7.34
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
TGAAACTGCTTTTGGTTACAAGGGTCTGAAGATCTTGTTATATTATATTGCTGGTAGCCTATCAACAATGTTCCGTGTTGAATATGCATCTAAAGTTGATGAGAACTTTGACTGTGTAGAG
Seq A exon
GCAGATGATGTTGAGGGGAAAATTAGACAAATCATTCCACCTGGATTTTGCACAAACACAAATGATTTTCTTTCGTTGCTGGAAAAAGAAGCTGATTTCAAGCCATTTGGAACCTTACTTCACACATACTCTGTTCTCAGTCCAACAGGAGGAGAAAACTTTACCTTTCAGATTTATAAG
Seq C2 exon
GCTGACATGACATGTAGAGGCTTTCGAGAATATCATGAAAGGCTTCAGACCTTTTTGATGTGGTTTATTGAAACTGCTAGCTTTATTGACGTGGATGATGAAAGATGGCACTACTTTCTAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010118-'4-6,'4-5,5-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF103944=Hat1_N=FE(24.7=100)
A:
PF103944=Hat1_N=FE(36.4=100)
C2:
PF103944=Hat1_N=PD(14.2=56.1),PF135081=Acetyltransf_7=PU(7.0=17.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAACTGCTTTTGGTTACAAGGG
R:
ACTAGAAAGTAGTGCCATCTTTCA
Band lengths:
243-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development