GgaEX6042321 @ galGal3
Exon Skipping
Gene
ENSGALG00000009525 | HAT1
Description
NA
Coordinates
chr7:19322943-19328432:-
Coord C1 exon
chr7:19328312-19328432
Coord A exon
chr7:19323299-19323478
Coord C2 exon
chr7:19322943-19323064
Length
180 bp
Sequences
Splice sites
3' ss Seq
CCCTGTTTTGTATTCCCCAGGCA
3' ss Score
10.86
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
TGAAGTTGCCTTTGGTTACAAGGGACTGAAGATTCTCTTATACTACATCGCTGGTAACCTGTCAACTCTCTTCCGCATTGAATATACATCTAAAGTTAATGAGAAGTTTGACTGTGTGGAG
Seq A exon
GCAGATGATGTTGAAAGTAAAATTAGAGAAATTATTCCTCCTGGCTTCTGTACAAACACAGATGACTTTGTCTCTCTGTTGGAAAAGGAGGTCAACTTTAAGCCCTTTGGAATGCTGCTGCACACATATTCTGTTCATAACGAGGAAGCTGGTGAAGACATTACATATCAGATATATAAG
Seq C2 exon
GCTGACATGACGTGTCCAGGCTTTCGAGAATATCATGAAAGGCTTCAGACATTCTTGATGTGGTTTATTGAAACTGCTAGCTTTATTGATGTAGATGATGAAAGATGGAACTACTTTATAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009525-'10-9,'10-7,14-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF103944=Hat1_N=FE(24.7=100)
A:
PF103944=Hat1_N=FE(36.4=100)
C2:
PF103944=Hat1_N=PD(14.2=56.1),PF135081=Acetyltransf_7=PU(9.6=22.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGTTGCCTTTGGTTACAAGG
R:
AGTAGTTCCATCTTTCATCATCTACA
Band lengths:
236-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]