MmuEX0022379 @ mm9
Exon Skipping
Gene
ENSMUSG00000027018 | Hat1
Description
histone aminotransferase 1 [Source:MGI Symbol;Acc:MGI:96013]
Coordinates
chr2:71248200-71258768:+
Coord C1 exon
chr2:71248200-71248320
Coord A exon
chr2:71258232-71258411
Coord C2 exon
chr2:71258647-71258768
Length
180 bp
Sequences
Splice sites
3' ss Seq
CTTTGTTCTCTATTCCTCAGGCA
3' ss Score
9.87
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
TGAAACTGCTTTCGGTTACAAGGGCCTGAAGATCTTGCTGTACTATATTGCTGGTAGCCTGTCAACACTGTTCCGTGTTGAATATTCATCTAAAGTTGATGAGAACTTTGATTGTGTGGAG
Seq A exon
GCAGATGATGTTGAAGGCAAAATCAGACAAATCATTCCACCTGGGTTTTGCACAAACACAAATGATTTTCTTTCCTTGCTGGAAAAGGAAACTAATTTCAAGCCTTTTGGAACCCTCCTCCATACATACACAGTTCCTAGTCAGACAGGAGGTGAAACCTTTACTTTCCAGATCCACAAG
Seq C2 exon
GCTGACATGACATGTAGAGGCTTTCGAGAATATCATGAAAGGCTTCAGACCTTTTTGATGTGGTTTATTGAAACTGCTAGCTTTATTGACGTGGATGATGAAAGATGGCACTACTTTCTAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027018_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF103944=Hat1_N=FE(24.7=100)
A:
PF103944=Hat1_N=FE(36.4=100)
C2:
PF103944=Hat1_N=PD(14.2=56.1),PF135081=Acetyltransf_7=PU(6.1=14.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACTGCTTTCGGTTACAAGGG
R:
ACTAGAAAGTAGTGCCATCTTTCA
Band lengths:
242-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: