HsaEX6016721 @ hg19
Exon Skipping
Gene
ENSG00000128708 | HAT1
Description
histone acetyltransferase 1 [Source:HGNC Symbol;Acc:4821]
Coordinates
chr2:172809399-172822429:+
Coord C1 exon
chr2:172809399-172809519
Coord A exon
chr2:172821859-172822038
Coord C2 exon
chr2:172822308-172822429
Length
180 bp
Sequences
Splice sites
3' ss Seq
TTATATCCTTTATTCTTTAGGCA
3' ss Score
8.9
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
TGAAACTGCTTTTGGTTACAAGGGTCTAAAGATCCTGTTATACTATATTGCTGGTAGCCTGTCAACAATGTTCCGTGTTGAATATGCATCTAAAGTTGATGAGAACTTTGACTGTGTAGAG
Seq A exon
GCAGATGATGTTGAGGGCAAAATTAGACAAATCATTCCACCTGGATTTTGCACAAACACGAATGATTTCCTTTCTTTACTGGAAAAGGAAGTTGATTTCAAGCCATTCGGAACCTTACTTCATACCTACTCAGTTCTCAGTCCAACAGGAGGAGAAAACTTTACCTTTCAGATATATAAG
Seq C2 exon
GCTGACATGACATGTAGAGGCTTTCGAGAATATCATGAAAGGCTTCAGACCTTTTTGATGTGGTTTATTGAAACTGCTAGCTTTATTGACGTGGATGATGAAAGATGGCACTACTTTCTAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000128708-'5-8,'5-7,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF103944=Hat1_N=PU(16.7=94.4)
A:
PF103944=Hat1_N=FE(36.4=100)
C2:
PF103944=Hat1_N=PD(22.5=56.1),PF135081=Acetyltransf_7=PU(11.5=26.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAACTGCTTTTGGTTACAAGGG
R:
ACTAGAAAGTAGTGCCATCTTTCA
Band lengths:
243-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)