MmuINT0175807 @ mm9
Intron Retention
Gene
ENSMUSG00000026975 | Wdr85
Description
WD repeat domain 85 [Source:MGI Symbol;Acc:MGI:1914478]
Coordinates
chr2:24817942-24818676:+
Coord C1 exon
chr2:24817942-24818145
Coord A exon
chr2:24818146-24818542
Coord C2 exon
chr2:24818543-24818676
Length
397 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCAT
5' ss Score
4.89
3' ss Seq
ATATTCTGTATATTCTGTAGCCT
3' ss Score
6.36
Exon sequences
Seq C1 exon
AGTGACTGAGGGAAGTGGAGAGAGAGTGTGGCGCATGCATCCTTTGGTTCTGGCTCAATGGCGGGTAGCCACGCAGGGACGTTGCGAGTCCTGCAGGCAGTAGACACTGAGCTTACCGCGGACTCGGTGGAATGGTGCCCAGTAGAAGGTTACCAGCATCTGCTGGCCTGCGGAACCTACCAGCTGCGAGCGCCCAGGGACCAG
Seq A exon
GTGCATGACCGGGAGGGTGAAGCAACAGGGGCAGGAGAAGAGGGACTGCTAACCTCAGGGGCCTAGACTGTGAAAACTAATGGGAAGGGTAAAGTGTATCTTTCGGGACCGTGCCTACTTCCGGGAGGTTTCCTGAGCATCCAAAACAACCACTTAAGAGTAGAATTGCGGCGGTGTACCTGCAGGTAGGTCAGGACTGTCCTGGCTGTATTGGGTCTGGGAGAACGCCCTTGTTCATTGAACACTTGACAGGAAAAGAGATTTTTCTCAGAAATTGAAAGTACCTACCTTATAAGCTATTTTATGCTTTGGCCCTCCTTTTTGCTCCAGTTAGGTTTCCTATTCTTTGTTACCCCAGCATCTGAAATAATCAGAGAATATTCTGTATATTCTGTAG
Seq C2 exon
CCTGCACTGGATGGCAGTGAGCCTCAAGTTCGTTTAGGTCGTCTCTACCTGTTCAGCTTCAGTGAGCACAACACGGCTAAACCTCTGCTTGAGGTCCAAAGAAGGGACTCTTCTGCTGTCCTGGACATGAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026975-Wdr85:NM_026044:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.041 A=NA C2=0.089
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGACTGAGGGAAGTGGAGA
R:
TCATGTCCAGGACAGCAGAAGA
Band lengths:
334-731
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: