RnoINT0050764 @ rn6
Intron Retention
Gene
ENSRNOG00000008102 | Dph7
Description
diphthamide biosynthesis 7 [Source:RGD Symbol;Acc:1304868]
Coordinates
chr3:2170533-2171184:+
Coord C1 exon
chr3:2170533-2170679
Coord A exon
chr3:2170680-2171050
Coord C2 exon
chr3:2171051-2171184
Length
371 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCAT
5' ss Score
4.89
3' ss Seq
TCAGAGAATATATTTTGTAGCCT
3' ss Score
0.57
Exon sequences
Seq C1 exon
ATGGCGGGCAGCCGTACCGGGGTTTTGCGAGCGCTGCAGGCAGTGGACACCGAGCTTACTGCGGACTCGGTGGAATGGTGCCCGGTTGAGGGTTGCCAGCATCTGCTGGCCTGCGGAACCTACCAGCTGCGAGCGCCCAAGGACCAG
Seq A exon
GTGCATGGCTGGGAGGTTGAGGCCGGGGCAGAAGAGGGACTGCTAACCTAAAAGGTCTAGAACTGAGTACTAATGGGAAGGGACTTTTTGGGACTGTGCCTATTTCCGGAAGGTTTTCTGAGCATCCAAAAAAACCGCTTAAGAGAATTATGGCTATGTAACTGCTGGCAGGTCGGAACTGTACTGGCTGTACTGGATCCGGGAGAGCTCCCTTGTTCGTTGAACACTTAGCAGGAAAGGTTTCCTCAGAAATTCAAAGCATCTACCTTAGAAGCTGTTCTCTGCCTTGGCCCTCCTCTTTGCTCCAGTTAGGCTTCCCATCCTTTCTTATCTCAGTACCTGTTGAGGTAATCAGAGAATATATTTTGTAG
Seq C2 exon
CCTGCACCGGATGGCAGTGAGCCTCAAGTTCGTTTAGGTCGTCTCTACCTGTTCAGCTTCAGTGAGGACAACACGGCTAAACCTCTGCTTGAGGTCCAAAGAAGGGATTCTTCTGCTGTCCTGGACATGAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008102:ENSRNOT00000046898:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=NA C2=0.156
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTACCGGGGTTTTGCG
R:
CATTTCATGTCCAGGACAGCAGA
Band lengths:
270-641
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]