RnoEX0029598 @ rn6
Exon Skipping
Gene
ENSRNOG00000008102 | Dph7
Description
diphthamide biosynthesis 7 [Source:RGD Symbol;Acc:1304868]
Coordinates
chr3:2170533-2171602:+
Coord C1 exon
chr3:2170533-2170679
Coord A exon
chr3:2171051-2171184
Coord C2 exon
chr3:2171515-2171602
Length
134 bp
Sequences
Splice sites
3' ss Seq
TCAGAGAATATATTTTGTAGCCT
3' ss Score
0.57
5' ss Seq
ATGGTAGGA
5' ss Score
6.66
Exon sequences
Seq C1 exon
ATGGCGGGCAGCCGTACCGGGGTTTTGCGAGCGCTGCAGGCAGTGGACACCGAGCTTACTGCGGACTCGGTGGAATGGTGCCCGGTTGAGGGTTGCCAGCATCTGCTGGCCTGCGGAACCTACCAGCTGCGAGCGCCCAAGGACCAG
Seq A exon
CCTGCACCGGATGGCAGTGAGCCTCAAGTTCGTTTAGGTCGTCTCTACCTGTTCAGCTTCAGTGAGGACAACACGGCTAAACCTCTGCTTGAGGTCCAAAGAAGGGATTCTTCTGCTGTCCTGGACATGAAATG
Seq C2 exon
GTGCCATATCCCAGTGTCTGGCCATGTGCTTTTAGGCTTGGCAAATGCCAGTGGATCTGTAGAGCTGCTCCGCCTGATGGAATGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008102-'0-1,'0-0,3-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=0.156 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTACCGGGGTTTTGCGAG
R:
CTCACATTCCATCAGGCGGAG
Band lengths:
223-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]