DreEX6010756 @ danRer10
Exon Skipping
Gene
ENSDARG00000062083 | dph7
Description
diphthamide biosynthesis 7 [Source:ZFIN;Acc:ZDB-GENE-070410-57]
Coordinates
chr5:24579253-24580518:-
Coord C1 exon
chr5:24580108-24580518
Coord A exon
chr5:24579868-24580004
Coord C2 exon
chr5:24579253-24579308
Length
137 bp
Sequences
Splice sites
3' ss Seq
TTGTGTTTTGTGTTAAACAGCAG
3' ss Score
7.06
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
GTAAAACGATAAAAGTCGAAGTTACACGAACACGGTAATGCTCTTGAAATTGTCATTTGATGTTAAGTTATAAAATGTCAAAAAAAACTTAATACATAAAATTATATGAGCTTAAAATTGCAACAATATGACAGCTGACCCGGTGTGTTGAAAGTAACGGTTATCATAGCCTGACGGACAGACAGTGCGCTTCCTCTTATTTGTTGGTCCGTTAACACGTTTATTCTTTCTAAGTAAGTTAGCTTTATGTTGTGCCAAGCGGTTTAAATGGGTTGGCAGTCTCGAACCCGAACCCTGCAGGTGTTTGACACGGAGTTAACTGCGGATACGGTCGAGTGGTGCCCCATACCACAGTGGGCTCATGTTCTGGCATGTGGGACTTACCAACAACTTCTGGAAGGAGATGATAAG
Seq A exon
CAGAGGACAGAAGGTTCCGCTGCCCCGAGCAGAATCGGTCGGCTTTATCTGTTTGACTGTAATCCTCAGTCGTCGTTCATTCCTCCATTGACGGAGAGTCAGAGAATAGACACAGCAGCTATACTCGATCTCAAGTG
Seq C2 exon
GTGCATGAATAAATTGCCTTCAGCTGTCTCTTTGCATACTCAAATATACACTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062083-'0-2,'0-0,1-2=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.042 A=0.120 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTGGTCCGTTAACACGTTT
R:
GCAAAGAGACAGCTGAAGGCA
Band lengths:
245-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]