MmuEX0052067 @ mm10
Exon Skipping
Gene
ENSMUSG00000026975 | Dph7
Description
diphthamine biosynethesis 7 [Source:MGI Symbol;Acc:MGI:1914478]
Coordinates
chr2:24962400-24963543:+
Coord C1 exon
chr2:24962400-24962625
Coord A exon
chr2:24963023-24963156
Coord C2 exon
chr2:24963456-24963543
Length
134 bp
Sequences
Splice sites
3' ss Seq
ATATTCTGTATATTCTGTAGCCT
3' ss Score
6.36
5' ss Seq
ATGGTAGGG
5' ss Score
5.88
Exon sequences
Seq C1 exon
CGGGAATCTTCGGAGGGTCGGCAGTGACTGAGGGAAGTGGAGAGAGAGTGTGGCGCATGCATCCTTTGGTTCTGGCTCAATGGCGGGTAGCCACGCAGGGACGTTGCGAGTCCTGCAGGCAGTAGACACTGAGCTTACCGCGGACTCGGTGGAATGGTGCCCAGTAGAAGGTTACCAGCATCTGCTGGCCTGCGGAACCTACCAGCTGCGAGCGCCCAGGGACCAG
Seq A exon
CCTGCACTGGATGGCAGTGAGCCTCAAGTTCGTTTAGGTCGTCTCTACCTGTTCAGCTTCAGTGAGCACAACACGGCTAAACCTCTGCTTGAGGTCCAAAGAAGGGACTCTTCTGCTGTCCTGGACATGAAATG
Seq C2 exon
GTGCCACATCCCAGTCTCTGGCCATGTGCTTTTAGGCTTGGCAAACGCCAGTGGATCCATAGGGCTGCTCCGCCTGATGGAATGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026975-'0-1,'0-0,3-1
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.046 A=0.157 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCCTTTGGTTCTGGCTCA
R:
CTCACATTCCATCAGGCGGAG
Band lengths:
256-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types