MmuINT0175808 @ mm10
Intron Retention
Gene
ENSMUSG00000026975 | Dph7
Description
diphthamine biosynethesis 7 [Source:MGI Symbol;Acc:MGI:1914478]
Coordinates
chr2:24963023-24963543:+
Coord C1 exon
chr2:24963023-24963156
Coord A exon
chr2:24963157-24963455
Coord C2 exon
chr2:24963456-24963543
Length
299 bp
Sequences
Splice sites
5' ss Seq
ATGGTAGGG
5' ss Score
5.88
3' ss Seq
TTTTATCTGTTCTCCCTCAGGTG
3' ss Score
12.27
Exon sequences
Seq C1 exon
CCTGCACTGGATGGCAGTGAGCCTCAAGTTCGTTTAGGTCGTCTCTACCTGTTCAGCTTCAGTGAGCACAACACGGCTAAACCTCTGCTTGAGGTCCAAAGAAGGGACTCTTCTGCTGTCCTGGACATGAAATG
Seq A exon
GTAGGGTTTGGGTAACCCCTCCTGTTCTGAGAGCCTGATGCCCTCCAGTGATACAGTGAATAACTGAACTCTGTGTTCTGTCATTTGTGGTCCTTGGAACTTCCCTGGTCAGTTTCCCAGCCCCAGAGTCACGATTAGTCTGGGAAGCACCCTGAGATCAAGTTTGATAACCTGAAAAGCCTTTGTTTGGAGACAACAGTTGGCTCTAGTTTGGTTTTGGAAATGAAATACAGAAAGTCATTGGGATTCAGGAAGCTCTTCCCAGCTGTGAGTGCATACTTTTATCTGTTCTCCCTCAG
Seq C2 exon
GTGCCACATCCCAGTCTCTGGCCATGTGCTTTTAGGCTTGGCAAACGCCAGTGGATCCATAGGGCTGCTCCGCCTGATGGAATGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026975:ENSMUST00000028351:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.157 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCACTGGATGGCAGTGAG
R:
CTCACATTCCATCAGGCGGAG
Band lengths:
221-520
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types