DreINT0059666 @ danRer10
Intron Retention
Gene
ENSDARG00000062083 | dph7
Description
diphthamide biosynthesis 7 [Source:ZFIN;Acc:ZDB-GENE-070410-57]
Coordinates
chr5:24578966-24580004:-
Coord C1 exon
chr5:24579868-24580004
Coord A exon
chr5:24579054-24579867
Coord C2 exon
chr5:24578966-24579053
Length
814 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
TTTGTATTTAATTTTTTTAGGTG
3' ss Score
9.35
Exon sequences
Seq C1 exon
CAGAGGACAGAAGGTTCCGCTGCCCCGAGCAGAATCGGTCGGCTTTATCTGTTTGACTGTAATCCTCAGTCGTCGTTCATTCCTCCATTGACGGAGAGTCAGAGAATAGACACAGCAGCTATACTCGATCTCAAGTG
Seq A exon
GTGAGTCTATTAATAGGGTAAAGATGTTAAGAAGTAATTATCACGATCACAATAAGAATTATATTTCATATATAACAGTAATATTCAGTGTATGTATTTATGAAAATTATGTTTAAATATGCAAATAATGCATTATTTTATTAAATATGCAACGATTTGTTTGTATTTATAGCATTAAATTCTTAAGTCAGGTTTTTTTCTGAGGGAATAATATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCAGCCAATAAAATGTTGTGTACAATGTATGAGCCGATTCTTCTGTAAAAACCCTTATAGATAAGTGTAACTAACTTTTGGTGTGTGTATGTGCACAAGCGGAGATTTGTGACTCAGTGCATGAGAAAAAAAAGAGAAAACCGCCTTTAAAAATGTATTGTAATTTCATACATGAATTAACATCGTGCAACAAAAGAAGCACATGAAAGCCTATTTTGAGTTTTTGCTTTACATTAGTCTGAAAATATATACAATAAAATAAATTTCTAAATTGACAGGTGCATGAATAAATTGCCTTCAGCTGTCTCTTTGCATACTCAAATATACACTCTAGGTATGTTGTTTTAAATTTAACATATTTAACTTTTTCGGTTATGTTTGTTGTTTACTGTTTATGATGGGAGGAATCCATTTATTTTCCGCATGTATTTTCTAGTCACGGCTGATGGTCCATAATGATGTGGATGCTGAGTTCACATGGAAATTTCCAGGCCAACAAACATTTTTTTTTTTTTTGTATTTAATTTTTTTAG
Seq C2 exon
GTGCCATGTACCAATATCTGAGCGCCCATTATTGGGAATGGCCACTGCGAGTGGAGAAATCCAGCTTTACAAGCTTATCGAAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062083:ENSDART00000089339:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.120 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGGACAGAAGGTTCCGCT
R:
TAAAGCTGGATTTCTCCACTCGC
Band lengths:
206-1020
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]