GgaINT1011826 @ galGal4
Intron Retention
Gene
ENSGALG00000008750 | DPH7
Description
diphthamide biosynthesis 7 [Source:HGNC Symbol;Acc:HGNC:25199]
Coordinates
chr17:1573276-1574335:+
Coord C1 exon
chr17:1573276-1573420
Coord A exon
chr17:1573421-1574247
Coord C2 exon
chr17:1574248-1574335
Length
827 bp
Sequences
Splice sites
5' ss Seq
ATGGTAATG
5' ss Score
5.46
3' ss Seq
TTAACTGCTGGATCTTTCAGGTG
3' ss Score
9.55
Exon sequences
Seq C1 exon
TGGCGCAGACCGACTGCAGAGGGAGCCACGAGGCCTGCGACCGGACGGGGCGCCTCTACCTCTACCACTACAACGAGGAGCAGCCCTACATCCCGCTGACTGAGATCCAGAGGATTGACACCGCTGCCATCCTGGACATCAAATG
Seq A exon
GTAATGCTGGGCTGGGGGGGACTGGAGGCCTCGCCGGGCTCTGCTGCTCCTTGGTGCCTTCTGCCATTGGCCGGGCTGCAGCCTGACTGCTTCCAGCTGAATTGTCCCCGACTGCTCAGGGAGGTATCCACCTTTAGCTCCAGTGAGCAAAGTGTGCTCATTTCTGCATTACGTTCTCCTGCGTGCTTATGAGCAGCTGGGTAGCGACTGCAGACCTCATTTGTTTATCATACAATCGTTTGAGTTGGCAGGGACACTTAAAGGCCATCCGGTTGCACTCCCTGCAGTGCAACGGGACACCCACAGCTCCATCAGTGCTCAGAGCCCCGTCCAGCTCTGACCTTGGCTGTCTGCAGGGATGGGGCACCACCACCTCTCAGGGCAACCCATGCAGTGCCTCACCACCCTTATTGTAAAAAACTTCTCCCTTATATCCAGTCTAAATCTCCCCTCTTTTAGTTGGAAACCATTTTCCCTCGTGCCCCTGTCCCCTCCCTTCTCACAGCCCTTTAGATACTGACATGCAGCTCTCAGCTCGGCCCTGTGCCTTCACTTCCCTGGGCTGCACAGCCCCAGCTCTCAGCTTGTCCTTGCAGGAAAGTGTTCCGTCTCTTAGATTTATATCATAATACATCATAGATTCCCTGATGTATAATATTTTACCCTTGGTGCAGGTTTGTGGAAACTAGAAGACCCTTAGATTTTCTTCATGAGATTTTTTAATCTAGCGCCCTTTCTTTCTGCACCCTAGAATAAAAGCTATTGCTTTTCTCCTTAAACTGAAGACAGGTGTATGTTCAAGACTTTTTAACTGCTGGATCTTTCAG
Seq C2 exon
GTGCCACGTTCCGGTTGCAGAACATCCCATGGTTGGCATTGCAAACTCGACGGGTGCTGTGGAGTTCTGCCACCTGACTGGCAGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008750:ENSGALT00000014239:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGACCGACTGCAGAGGGAG
R:
TCAGGTGGCAGAACTCCACAG
Band lengths:
217-1044
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]