HsaINT0182685 @ hg19
Intron Retention
Gene
ENSG00000148399 | WDR85
Description
WD repeat domain 85 [Source:HGNC Symbol;Acc:25199]
Coordinates
chr9:140470532-140472055:-
Coord C1 exon
chr9:140471922-140472055
Coord A exon
chr9:140470620-140471921
Coord C2 exon
chr9:140470532-140470619
Length
1302 bp
Sequences
Splice sites
5' ss Seq
ATGGTATAA
5' ss Score
2.05
3' ss Seq
ATGGTGGGCCCTCTCCTCAGGTG
3' ss Score
8.73
Exon sequences
Seq C1 exon
GGTGGAATGGAAGTTAAGGAGCCTCAGGTCCGTTTAGGCCGTCTCTTCCTGTACAGTTTCAATGACAACAACTCTATTCACCCTCTGGTCGAGGTCCAAAGAAAAGATACTTCTGCAATCCTGGACATGAAATG
Seq A exon
GTATAACTGTGATAATCCCACTGGGTGTAGAATTTGTCATGAGTAGCAATCAGGGAAGCCTGATGCCTGATGCCTTCAACAAGACAGGCATTGCATCTCAACTTTGGATTTGTTTCTTTGCTGTCCCGCCTATCTTCCACCTGGGGAGTGCTTTACCTGGGGCTTATTTCCTTTGTCATGTTCCAGCCGGGGAAGTGATGGGAGTTTTCTGACTTCATAACCTGGGGCGTCTTTTGTTTGAGAACACAGTTGTAGGCTCTAGCCCACTTTTGGAGCTGAGATTTAAATGCAGTGGTGTGTGGCATAATTATGTTTTGGTCAACAATGGAGCACGTATACCATGGTGGTGCCTTAACGTAATGGAGATGCCCTATACAGGTGTACCAGTTTTTATCCTTTTTAATTTTTTTTTTTTTGAGGCAGGGTTTTGTTCCGTTGCCCAGGCTGGAATGCAGTCACGTGATCATAGCTCACTGCAGCCTTGAACTCCTGGGCTCAAGCAATTCTCTGTCTCAGCCTCTCGAGTAGCTGAGACTTCAGACTTCAGGTAGATGCCACCATGCCTCTTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCGCCCGGGCTAGAGTGCAGTGGCGCGGTCTCGGCTCACTGCAAGCTCCGCCTCCTGAGTTCACGCCATTCTCCTGCGTCAGCCTCCCTAAGAGCTCGGTCTACAGGCGCCCGCCACCACACCCGGCTTATTTTTTTGTATTTTTAGTAGAGACGTGGTTTCACCATGTTATTAGGATGGTCTTGATCTCCTGACCTCGTGATCCACCCGCCTCAGCCTCCCAACGTGCTGGGATTACAGGCGTGAGCCACGACGCCTGGCCTTACCACACCTCATTTTTGTTTGTTTGTTAGTTTGTAGAAACAGGGTCTTGCTATGTTGCTCAGGCTGGTTTCGAACTCCTTACCTCAAGTCATCCTCCTACCTCAGCTTCCCAAAGTGTTGGGGTTACAAGTGTGAGCCACCATGCCCGGCCACCTGTTTTTTATCCTTTATATTGTATTCTTACTGTATCTTTTCTATGTTTAGATATACAACCACTTCCTGTTGTGTCACACTTGCCTGCAGTAACATGCTGTAAGGTTTGTGGCATAGGAGCAGTGGGCCATACCATATAATCAAGGTGTGTAGTAGGATGTCCCAGCTGGGTTTGCGTGGACTGCAGCCCCGTTGTTAAGGGAAGCGTGACTGTGGTTACCGGGACGCACAGTGCACGCCTGTGCTCCGGGCACATTGGTGTGCTTATGGTGGGCCCTCTCCTCAG
Seq C2 exon
GTGTCACATCCCGGTGGCTGGACATGCCCTCTTGGGCTTGGCAGATGCCAGTGGATCCATACAACTGCTCCGCCTGGTGGAATCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148399-WDR85:NM_138778:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.109 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGAATGGAAGTTAAGGAGCC
R:
CTCAGATTCCACCAGGCGGAG
Band lengths:
222-1524
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)