HsaINT0182685 @ hg38
Intron Retention
Gene
ENSG00000148399 | DPH7
Description
diphthamide biosynthesis 7 [Source:HGNC Symbol;Acc:HGNC:25199]
Coordinates
chr9:137576080-137576402:-
Coord C1 exon
chr9:137576309-137576402
Coord A exon
chr9:137576168-137576308
Coord C2 exon
chr9:137576080-137576167
Length
141 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
3' ss Seq
ATGGTGGGCCCTCTCCTCAGGTG
3' ss Score
8.73
Exon sequences
Seq C1 exon
ATATACAACCACTTCCTGTTGTGTCACACTTGCCTGCAGTAACATGCTGTAAGGTTTGTGGCATAGGAGCAGTGGGCCATACCATATAATCAAG
Seq A exon
GTGTGTAGTAGGATGTCCCAGCTGGGTTTGCGTGGACTGCAGCCCCGTTGTTAAGGGAAGCGTGACTGTGGTTACCGGGACGCACAGTGCACGCCTGTGCTCCGGGCACATTGGTGTGCTTATGGTGGGCCCTCTCCTCAG
Seq C2 exon
GTGTCACATCCCGGTGGCTGGACATGCCCTCTTGGGCTTGGCAGATGCCAGTGGATCCATACAACTGCTCCGCCTGGTGGAATCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148399:ENST00000460572:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACCACTTCCTGTTGTGTCA
R:
CTCAGATTCCACCAGGCGGAG
Band lengths:
178-319
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains