BtaINT0052326 @ bosTau6
Intron Retention
Gene
ENSBTAG00000038691 | DPH7
Description
diphthamide biosynthesis 7 [Source:HGNC Symbol;Acc:HGNC:25199]
Coordinates
chr11:105575273-105575895:+
Coord C1 exon
chr11:105575273-105575406
Coord A exon
chr11:105575407-105575807
Coord C2 exon
chr11:105575808-105575895
Length
401 bp
Sequences
Splice sites
5' ss Seq
ATGGTACAC
5' ss Score
3.23
3' ss Seq
GCACGTGCATTCTCTCCTAGGTG
3' ss Score
8.73
Exon sequences
Seq C1 exon
AGTGAACTGGATGTTGACGAGCCTCCAATTCGTTTGGGTCGTCTCTACCTGTATAGTTGGAATGAGGACAGGTCTCCTTGCCCCCTGGTTGAGGTCCAAAGAAGAGATACTTCTGCGATCCTGGACATGAAATG
Seq A exon
GTACACGTTTGGTAACAGTTCCCCTTGGTTGGAATTTGTCATGAAAACCTGATTGTTTAGTCAGAGGAGCCTGATGCCTGGCGGCCTTAAACAAGACAGGGAGGCATCTGCATTAAGTTGGGGTTCATTTCTCTCCTGTCCTGTCTTTCCTGCCTGTGGAGGCTGCTGTAACTTGGGGCTCATTTCCTCTTTCAGTTTCCAAGCTGTACAGGTACTGTTGGTCTGTCTGGGAAGCAGTGCTGATTTTCTGCTTCATAAACTGGAGGATCTTGTAGGAACAGAACTGTAGGCTCCAAACTGGCTTTGGAGCTGAAATCTATAGCAGTGAGTCACGGGGGTGCCTGTCGTTCTGTACCCCAGGCACATCCTGTGTTCTGAGCGGCACGTGCATTCTCTCCTAG
Seq C2 exon
GTGTCACGTTCCAGTGGCTGGTCATCCCCTCTTGGGTGTGGCAGATGCTTCTGGGTCCATAGAGCTCCTCCGCTTGTTGCCATCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038691:ENSBTAT00000063228:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACTGGATGTTGACGAGCC
R:
AGCGGAGGAGCTCTATGGAC
Band lengths:
206-607
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development