RnoINT0050765 @ rn6
Intron Retention
Gene
ENSRNOG00000008102 | Dph7
Description
diphthamide biosynthesis 7 [Source:RGD Symbol;Acc:1304868]
Coordinates
chr3:2171051-2171602:+
Coord C1 exon
chr3:2171051-2171184
Coord A exon
chr3:2171185-2171514
Coord C2 exon
chr3:2171515-2171602
Length
330 bp
Sequences
Splice sites
5' ss Seq
ATGGTAGGA
5' ss Score
6.66
3' ss Seq
CTTTTGCTGTTCTCCCACAGGTG
3' ss Score
12.92
Exon sequences
Seq C1 exon
CCTGCACCGGATGGCAGTGAGCCTCAAGTTCGTTTAGGTCGTCTCTACCTGTTCAGCTTCAGTGAGGACAACACGGCTAAACCTCTGCTTGAGGTCCAAAGAAGGGATTCTTCTGCTGTCCTGGACATGAAATG
Seq A exon
GTAGGATTTAGGTAACCACTCCTGATCTGAAAGCCTGATGCCCTAGGGGCCTTCAGTGATACAGTGAACAACGGAATGCCTTGTTCTGGCATTTGTTGTCCTTGGGACGTACAAGACCCTGTCTATACCTGGCATTCCCCTGGTCAGTTTCCCAGTCCCAGAGTCAGGATTAGTCTGGGAAAGCAACCTGACTTCCAGTTTTATAATCTGGAAAGCCTTTGTTTGGAGACAGTTGGCTCTAGCTTGGTTTTGGAAATGCAATATAGCAAGTCATCGGGATCCATGAAGTTCTTCCAAGTGTGAGTGCATACTTTTGCTGTTCTCCCACAG
Seq C2 exon
GTGCCATATCCCAGTGTCTGGCCATGTGCTTTTAGGCTTGGCAAATGCCAGTGGATCTGTAGAGCTGCTCCGCCTGATGGAATGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008102:ENSRNOT00000046898:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.156 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCACCGGATGGCAGT
R:
CTCACATTCCATCAGGCGGAG
Band lengths:
222-552
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]