MmuINT0175807 @ mm10
Intron Retention
Gene
ENSMUSG00000026975 | Dph7
Description
diphthamine biosynethesis 7 [Source:MGI Symbol;Acc:MGI:1914478]
Coordinates
chr2:24962400-24963156:+
Coord C1 exon
chr2:24962400-24962625
Coord A exon
chr2:24962626-24963022
Coord C2 exon
chr2:24963023-24963156
Length
397 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCAT
5' ss Score
4.89
3' ss Seq
ATATTCTGTATATTCTGTAGCCT
3' ss Score
6.36
Exon sequences
Seq C1 exon
CGGGAATCTTCGGAGGGTCGGCAGTGACTGAGGGAAGTGGAGAGAGAGTGTGGCGCATGCATCCTTTGGTTCTGGCTCAATGGCGGGTAGCCACGCAGGGACGTTGCGAGTCCTGCAGGCAGTAGACACTGAGCTTACCGCGGACTCGGTGGAATGGTGCCCAGTAGAAGGTTACCAGCATCTGCTGGCCTGCGGAACCTACCAGCTGCGAGCGCCCAGGGACCAG
Seq A exon
GTGCATGACCGGGAGGGTGAAGCAACAGGGGCAGGAGAAGAGGGACTGCTAACCTCAGGGGCCTAGACTGTGAAAACTAATGGGAAGGGTAAAGTGTATCTTTCGGGACCGTGCCTACTTCCGGGAGGTTTCCTGAGCATCCAAAACAACCACTTAAGAGTAGAATTGCGGCGGTGTACCTGCAGGTAGGTCAGGACTGTCCTGGCTGTATTGGGTCTGGGAGAACGCCCTTGTTCATTGAACACTTGACAGGAAAAGAGATTTTTCTCAGAAATTGAAAGTACCTACCTTATAAGCTATTTTATGCTTTGGCCCTCCTTTTTGCTCCAGTTAGGTTTCCTATTCTTTGTTACCCCAGCATCTGAAATAATCAGAGAATATTCTGTATATTCTGTAG
Seq C2 exon
CCTGCACTGGATGGCAGTGAGCCTCAAGTTCGTTTAGGTCGTCTCTACCTGTTCAGCTTCAGTGAGCACAACACGGCTAAACCTCTGCTTGAGGTCCAAAGAAGGGACTCTTCTGCTGTCCTGGACATGAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026975:ENSMUST00000028351:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.046 A=NA C2=0.157
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATCTTCGGAGGGTCGGCAG
R:
TCCAGGACAGCAGAAGAGTCC
Band lengths:
348-745
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types