HsaINT0182684 @ hg19
Intron Retention
Gene
ENSG00000148399 | WDR85
Description
WD repeat domain 85 [Source:HGNC Symbol;Acc:25199]
Coordinates
chr9:140471922-140473387:-
Coord C1 exon
chr9:140473077-140473387
Coord A exon
chr9:140472056-140473076
Coord C2 exon
chr9:140471922-140472055
Length
1021 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCGC
5' ss Score
9.05
3' ss Seq
TACCTCTGCATTTTTTGTAGGGT
3' ss Score
8.16
Exon sequences
Seq C1 exon
CCCCGGAAGGAGTCGCGAGAGAGGCGGCCCGCGCTGACGGTGTCCCTGGGGCTCTGCGCTCGTCCGGCCGGCCCCGGCCTCGCCGCCCCGCGCAGTACCCAGCCCGGCCCCGCCGACCCGCCTCTACTGCCGGCTCCGCGCCCTTCCCCGAGGGCTGGATGATGGGCTGTTTCGCCCTGCAAACGGTGGACACCGAGCTGACCGCGGACTCGGTGGAGTGGTGCCCGCTGCAAGGCTGCAGGCACCTGCTGGCGTGCGGGACCTACCAGCTGCGGCGGCCGGAGGACCGGCCTGCCGGCCCCCAGAACAAG
Seq A exon
GTGCGCGCGCCGCGGCTTCGGGAGGGGAGGGCGGGGCCGGCCACGAGGTTGAGGCCGAAAGGCGCACCGAATCGCCCAGGAGATGAAGAGGGGATATTGGCCCTTTGGCCAGGAGGTAGGCTGGAAACAGTTTAGAATCTTTTTAAAAAAATTGTTCTCGGCCGGGCGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGACGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACATGGTGAAACCCCGTCTCTACTAAAAAAATACAAAACAATTAGCCGGGCGTGGTGGCGGCGCCTGTAGTCCCAGCCACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCAGAGCTTGCAGTGAGCCGAGATCGCACCACTGCATTCCAGCCTGGGCGATACAGCAAGACTACATCTCAAAAAAAAGAAATTACTTTTTTCTGAGACAAGGTCTTGCACTGTCACCCAGGCTGGAGTGCAGCCTCGGACTCCAGGGCTCAGGGCATCCTCCCGCCTCAACCCCCTGAGTAGCTGGCACCACAGGCACGAGCCACCGCCCCCGGCCAACTTTAAAATCTTGAGAGCAGAACGTCTTCTATATACAGGTGTGGCCCAAGGGAATGGGTGGAATGTACAGTAAAGAGAAAGTGGGAATTATATCTTAACTTCTGGTGGGTACATATTAGGATCCAAATTGGGCACTGGAACAACAGGCGTAAGTCAGGACTGTCCCAGGCAAACTGGGTTCTGTGGTTACCCTAGCCATAGCTGGTCCCTGTTGGCCGGTTTAGAAGGAGCCTTCTCTACTGGGTCCAGGAGTGTTCACCTACTCATTAATAGACGTTTCTCCAGCTCAGAAAACCAGAGGTTCTCCTTCCAGGCAGAATTCCACTCCTTTAGTCATGGCAAACCTTTGAGTTCCTTGGATCCCTTTTCCCATCCTTTGGGTTCCTTCGTGTCTTGGGATAATCAGAGACTACCTCTGCATTTTTTGTAG
Seq C2 exon
GGTGGAATGGAAGTTAAGGAGCCTCAGGTCCGTTTAGGCCGTCTCTTCCTGTACAGTTTCAATGACAACAACTCTATTCACCCTCTGGTCGAGGTCCAAAGAAAAGATACTTCTGCAATCCTGGACATGAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148399-WDR85:NM_138778:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.208 A=NA C2=0.109
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGGAGTCGCGAGAGAGG
R:
AAACGGACCTGAGGCTCCTTA
Band lengths:
342-1363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)