HsaINT0182684 @ hg38
Intron Retention
Gene
ENSG00000148399 | DPH7
Description
diphthamide biosynthesis 7 [Source:HGNC Symbol;Acc:HGNC:25199]
Coordinates
chr9:137577577-137578717:-
Coord C1 exon
chr9:137578625-137578717
Coord A exon
chr9:137577604-137578624
Coord C2 exon
chr9:137577577-137577603
Length
1021 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCGC
5' ss Score
9.05
3' ss Seq
TACCTCTGCATTTTTTGTAGGGT
3' ss Score
8.16
Exon sequences
Seq C1 exon
TGGTGCCCGCTGCAAGGCTGCAGGCACCTGCTGGCGTGCGGGACCTACCAGCTGCGGCGGCCGGAGGACCGGCCTGCCGGCCCCCAGAACAAG
Seq A exon
GTGCGCGCGCCGCGGCTTCGGGAGGGGAGGGCGGGGCCGGCCACGAGGTTGAGGCCGAAAGGCGCACCGAATCGCCCAGGAGATGAAGAGGGGATATTGGCCCTTTGGCCAGGAGGTAGGCTGGAAACAGTTTAGAATCTTTTTAAAAAAATTGTTCTCGGCCGGGCGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGACGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACATGGTGAAACCCCGTCTCTACTAAAAAAATACAAAACAATTAGCCGGGCGTGGTGGCGGCGCCTGTAGTCCCAGCCACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCAGAGCTTGCAGTGAGCCGAGATCGCACCACTGCATTCCAGCCTGGGCGATACAGCAAGACTACATCTCAAAAAAAAGAAATTACTTTTTTCTGAGACAAGGTCTTGCACTGTCACCCAGGCTGGAGTGCAGCCTCGGACTCCAGGGCTCAGGGCATCCTCCCGCCTCAACCCCCTGAGTAGCTGGCACCACAGGCACGAGCCACCGCCCCCGGCCAACTTTAAAATCTTGAGAGCAGAACGTCTTCTATATACAGGTGTGGCCCAAGGGAATGGGTGGAATGTACAGTAAAGAGAAAGTGGGAATTATATCTTAACTTCTGGTGGGTACATATTAGGATCCAAATTGGGCACTGGAACAACAGGCGTAAGTCAGGACTGTCCCAGGCAAACTGGGTTCTGTGGTTACCCTAGCCATAGCTGGTCCCTGTTGGCCGGTTTAGAAGGAGCCTTCTCTACTGGGTCCAGGAGTGTTCACCTACTCATTAATAGACGTTTCTCCAGCTCAGAAAACCAGAGGTTCTCCTTCCAGGCAGAATTCCACTCCTTTAGTCATGGCAAACCTTTGAGTTCCTTGGATCCCTTTTCCCATCCTTTGGGTTCCTTCGTGTCTTGGGATAATCAGAGACTACCTCTGCATTTTTTGTAG
Seq C2 exon
GGTGGAATGGAAGTTAAGGAGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148399:ENST00000460572:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.203 A=NA C2=0.112
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains