BtaINT0052324 @ bosTau6
Intron Retention
Gene
ENSBTAG00000038691 | DPH7
Description
diphthamide biosynthesis 7 [Source:HGNC Symbol;Acc:HGNC:25199]
Coordinates
chr11:105574514-105575406:+
Coord C1 exon
chr11:105574514-105574729
Coord A exon
chr11:105574730-105575272
Coord C2 exon
chr11:105575273-105575406
Length
543 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGC
5' ss Score
9.1
3' ss Seq
ATATCTGCATTTTTTTGTAGAGT
3' ss Score
7.67
Exon sequences
Seq C1 exon
CGCCTCTGCCGCGCGCTACCCGCCACCACGGCCGCCGCCGCGTCCTCCGGGTGTGCGGGGGCCGACGGCCGAGTCCAGCTGTTGCAGGCTGTGGACACGGAGCACACCGTGGACTCGGTAGAGTGGTGCCCGCTGGCCGGCTGCAGGCACTTGCTGGCGTGCGGCACCTACCAGCTGTGGAAGCCGGAGGACTGGCCCGCCGACGGGGAGTGCCAG
Seq A exon
GTGCGCGGGCCTCCTGGCCTCGGGCCTCGGGCGGTCTGCGGCCCCAGGTGGCCGTTCCCAAGCGGCTAGAGTCCCCGACACGACCTCCTCTGGAGAAGGGCAAGTGAGAGGCAGAGCCGACCGCAAGCATCGAGACCCCTCTGGTCTGCAGCGGTGAGGCTGGCCAGGTTATGGGTGAAGTCTAGAGCAAAGAGAAAAGGGGATGTCATAGGAGCTCTACCTAAAGCCTTGAAGGCATCCACTTACGCGGATCCAAACCTAAACATTTTTAAGAGTGAAAGCTGGCACTGGGACCGTCCTAGGCAGGCAAACTGTGTCCCAGGGGAATCCGAACCACAGCTCCTTCCTGTTGGCCCCTTTAGAAGAAACATTGTATCCTAATCCAACTACTCGGTAATCACTTACAAGAGAAAAGACTCCAGCTCAGAAAATCAGAGTTCCCGGGTCTTGGCAAACCTGTTCTTTCTCTGTCCCTTTTCCCATCCTTTGGGTTCCTCAGTGTGTGTTAAGGTATTCAGAGAACATATCTGCATTTTTTTGTAG
Seq C2 exon
AGTGAACTGGATGTTGACGAGCCTCCAATTCGTTTGGGTCGTCTCTACCTGTATAGTTGGAATGAGGACAGGTCTCCTTGCCCCCTGGTTGAGGTCCAAAGAAGAGATACTTCTGCGATCCTGGACATGAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038691:ENSBTAT00000063228:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGGCCGAGTCCAGCTG
R:
CATTTCATGTCCAGGATCGCAGA
Band lengths:
287-830
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development