MmuALTD0015708-1/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000026975 | Wdr85
Description
WD repeat domain 85 [Source:MGI Symbol;Acc:MGI:1914478]
Coordinates
chr2:24818045-24818676:+
Coord C1 exon
chr2:24818045-24818145
Coord A exon
NA
Coord C2 exon
chr2:24818543-24818676
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCAT
5' ss Score
4.89
3' ss Seq
ATATTCTGTATATTCTGTAGCCT
3' ss Score
6.36
Exon sequences
Seq C1 exon
ACACTGAGCTTACCGCGGACTCGGTGGAATGGTGCCCAGTAGAAGGTTACCAGCATCTGCTGGCCTGCGGAACCTACCAGCTGCGAGCGCCCAGGGACCAG
Seq A exon
NA
Seq C2 exon
CCTGCACTGGATGGCAGTGAGCCTCAAGTTCGTTTAGGTCGTCTCTACCTGTTCAGCTTCAGTGAGCACAACACGGCTAAACCTCTGCTTGAGGTCCAAAGAAGGGACTCTTCTGCTGTCCTGGACATGAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026975-0-0,1-0-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.041 A=NA C2=0.089
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGAGCTTACCGCGGAC
R:
CATTTCATGTCCAGGACAGCAGA
Band lengths:
234-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: