MmuEX0052068 @ mm9
Exon Skipping
Gene
ENSMUSG00000026975 | Wdr85
Description
WD repeat domain 85 [Source:MGI Symbol;Acc:MGI:1914478]
Coordinates
chr2:24817920-24821174:+
Coord C1 exon
chr2:24817920-24818145
Coord A exon
chr2:24818976-24819063
Coord C2 exon
chr2:24821080-24821174
Length
88 bp
Sequences
Splice sites
3' ss Seq
TTTTATCTGTTCTCCCTCAGGTG
3' ss Score
12.27
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
Exon sequences
Seq C1 exon
CGGGAATCTTCGGAGGGTCGGCAGTGACTGAGGGAAGTGGAGAGAGAGTGTGGCGCATGCATCCTTTGGTTCTGGCTCAATGGCGGGTAGCCACGCAGGGACGTTGCGAGTCCTGCAGGCAGTAGACACTGAGCTTACCGCGGACTCGGTGGAATGGTGCCCAGTAGAAGGTTACCAGCATCTGCTGGCCTGCGGAACCTACCAGCTGCGAGCGCCCAGGGACCAG
Seq A exon
GTGCCACATCCCAGTCTCTGGCCATGTGCTTTTAGGCTTGGCAAACGCCAGTGGATCCATAGGGCTGCTCCGCCTGATGGAATGTGAG
Seq C2 exon
AACAACAGTTACACCCTGCAGCCAATATCCAGCCTCGCCCTGGATGAGAATTGTCTGTCCTTGTCAATGGATTGGTCCACTGGGAAATCTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026975_MULTIEX1-2/6=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.041 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTCCTGCAGGCAGTAGACA
R:
CAATTCTCATCCAGGGCGAGG
Band lengths:
172-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types