DreEX0028174 @ danRer10
Exon Skipping
Gene
ENSDARG00000062083 | dph7
Description
diphthamide biosynthesis 7 [Source:ZFIN;Acc:ZDB-GENE-070410-57]
Coordinates
chr5:24577396-24580004:-
Coord C1 exon
chr5:24579868-24580004
Coord A exon
chr5:24578966-24579053
Coord C2 exon
chr5:24577396-24577490
Length
88 bp
Sequences
Splice sites
3' ss Seq
TTTGTATTTAATTTTTTTAGGTG
3' ss Score
9.35
5' ss Seq
CAGGTGACT
5' ss Score
6.6
Exon sequences
Seq C1 exon
CAGAGGACAGAAGGTTCCGCTGCCCCGAGCAGAATCGGTCGGCTTTATCTGTTTGACTGTAATCCTCAGTCGTCGTTCATTCCTCCATTGACGGAGAGTCAGAGAATAGACACAGCAGCTATACTCGATCTCAAGTG
Seq A exon
GTGCCATGTACCAATATCTGAGCGCCCATTATTGGGAATGGCCACTGCGAGTGGAGAAATCCAGCTTTACAAGCTTATCGAAGCTCAG
Seq C2 exon
CAGGGCTCCAGTGGTCTGGAGTGTGAGCTGAGCACAGATTTGGGTCCTGACAGACTGGCCTTGTCTTTAGACTGGTCCACAGGGCGAGGCGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062083-'1-6,'1-4,4-6
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.120 A=0.000 C2=0.024
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGACAGAAGGTTCCGCTG
R:
ACCCAAATCTGTGCTCAGCTC
Band lengths:
181-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]