HsaEX0071399 @ hg38
Exon Skipping
Gene
ENSG00000148399 | DPH7
Description
diphthamide biosynthesis 7 [Source:HGNC Symbol;Acc:HGNC:25199]
Coordinates
chr9:137564893-137578549:-
Coord C1 exon
chr9:137578510-137578549
Coord A exon
chr9:137576080-137576167
Coord C2 exon
chr9:137564893-137565154
Length
88 bp
Sequences
Splice sites
3' ss Seq
ATGGTGGGCCCTCTCCTCAGGTG
3' ss Score
8.73
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
Exon sequences
Seq C1 exon
CCAGGAGATGAAGAGGGGATATTGGCCCTTTGGCCAGGAG
Seq A exon
GTGTCACATCCCGGTGGCTGGACATGCCCTCTTGGGCTTGGCAGATGCCAGTGGATCCATACAACTGCTCCGCCTGGTGGAATCTGAG
Seq C2 exon
GGGGCGACGATGGCCTTCTGAGGGGCTGGGACACCAGGGTACCCGGCAAATTTCTCTTCACCAGCAAAAGGTAACTGCCCAAGGGCCAGCACTCGGTGCCCACACCAGCCCCCGCGTTCCCTGGGTCACCAGCCCTCCCGTTCCCTGGGTGGGTCTGTGTGCTGGACACTGGTTCAGAAGCCGCCTCTGCTTGCAGACACACCATGGGTGTGTGCAGCATCCAGAGCAGCCCTCATCGGGAGCACATCCTGGCCACGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148399_MULTIEX1-4/7=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0040027=WD40=FE(55.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGGGATATTGGCCCTTTGG
R:
GAACGGGAGGGCTGGTGA
Band lengths:
171-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development