HsaEX0071398 @ hg38
Exon Skipping
Gene
ENSG00000148399 | DPH7
Description
diphthamide biosynthesis 7 [Source:HGNC Symbol;Acc:HGNC:25199]
Coordinates
chr9:137576080-137577603:-
Coord C1 exon
chr9:137577470-137577603
Coord A exon
chr9:137576309-137576402
Coord C2 exon
chr9:137576080-137576167
Length
94 bp
Sequences
Splice sites
3' ss Seq
TGTATCTTTTCTATGTTTAGATA
3' ss Score
8.22
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
Exon sequences
Seq C1 exon
GGTGGAATGGAAGTTAAGGAGCCTCAGGTCCGTTTAGGCCGTCTCTTCCTGTACAGTTTCAATGACAACAACTCTATTCACCCTCTGGTCGAGGTCCAAAGAAAAGATACTTCTGCAATCCTGGACATGAAATG
Seq A exon
ATATACAACCACTTCCTGTTGTGTCACACTTGCCTGCAGTAACATGCTGTAAGGTTTGTGGCATAGGAGCAGTGGGCCATACCATATAATCAAG
Seq C2 exon
GTGTCACATCCCGGTGGCTGGACATGCCCTCTTGGGCTTGGCAGATGCCAGTGGATCCATACAACTGCTCCGCCTGGTGGAATCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148399_MULTIEX1-3/7=2-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.112 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCCGTCTCTTCCTGTACAG
R:
CGGAGCAGTTGTATGGATCCAC
Band lengths:
171-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development