HsaEX0071398 @ hg19
Exon Skipping
Gene
ENSG00000148399 | WDR85
Description
WD repeat domain 85 [Source:HGNC Symbol;Acc:25199]
Coordinates
chr9:140470532-140472055:-
Coord C1 exon
chr9:140471922-140472055
Coord A exon
chr9:140470761-140470854
Coord C2 exon
chr9:140470532-140470619
Length
94 bp
Sequences
Splice sites
3' ss Seq
TGTATCTTTTCTATGTTTAGATA
3' ss Score
8.22
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
Exon sequences
Seq C1 exon
GGTGGAATGGAAGTTAAGGAGCCTCAGGTCCGTTTAGGCCGTCTCTTCCTGTACAGTTTCAATGACAACAACTCTATTCACCCTCTGGTCGAGGTCCAAAGAAAAGATACTTCTGCAATCCTGGACATGAAATG
Seq A exon
ATATACAACCACTTCCTGTTGTGTCACACTTGCCTGCAGTAACATGCTGTAAGGTTTGTGGCATAGGAGCAGTGGGCCATACCATATAATCAAG
Seq C2 exon
GTGTCACATCCCGGTGGCTGGACATGCCCTCTTGGGCTTGGCAGATGCCAGTGGATCCATACAACTGCTCCGCCTGGTGGAATCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148399_MULTIEX1-3/7=2-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.109 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCCGTCTCTTCCTGTACAG
R:
CGGAGCAGTTGTATGGATCCAC
Band lengths:
171-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)