HsaEX0071399 @ hg19
Exon Skipping
Gene
ENSG00000148399 | WDR85
Description
WD repeat domain 85 [Source:HGNC Symbol;Acc:25199]
Coordinates
chr9:140459537-140473387:-
Coord C1 exon
chr9:140472962-140473387
Coord A exon
chr9:140470532-140470619
Coord C2 exon
chr9:140459537-140459606
Length
88 bp
Sequences
Splice sites
3' ss Seq
ATGGTGGGCCCTCTCCTCAGGTG
3' ss Score
8.73
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
Exon sequences
Seq C1 exon
CCCCGGAAGGAGTCGCGAGAGAGGCGGCCCGCGCTGACGGTGTCCCTGGGGCTCTGCGCTCGTCCGGCCGGCCCCGGCCTCGCCGCCCCGCGCAGTACCCAGCCCGGCCCCGCCGACCCGCCTCTACTGCCGGCTCCGCGCCCTTCCCCGAGGGCTGGATGATGGGCTGTTTCGCCCTGCAAACGGTGGACACCGAGCTGACCGCGGACTCGGTGGAGTGGTGCCCGCTGCAAGGCTGCAGGCACCTGCTGGCGTGCGGGACCTACCAGCTGCGGCGGCCGGAGGACCGGCCTGCCGGCCCCCAGAACAAGGTGCGCGCGCCGCGGCTTCGGGAGGGGAGGGCGGGGCCGGCCACGAGGTTGAGGCCGAAAGGCGCACCGAATCGCCCAGGAGATGAAGAGGGGATATTGGCCCTTTGGCCAGGAG
Seq A exon
GTGTCACATCCCGGTGGCTGGACATGCCCTCTTGGGCTTGGCAGATGCCAGTGGATCCATACAACTGCTCCGCCTGGTGGAATCTGAG
Seq C2 exon
GGGGCGACGATGGCCTTCTGAGGGGCTGGGACACCAGGGTACCCGGCAAATTTCTCTTCACCAGCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148399_MULTIEX1-4/7=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.208 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0040027=WD40=PU(20.0=33.3)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGCCCCCAGAACAAGG
R:
GGTGTCCCAGCCCCTCAG
Band lengths:
167-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)