RnoEX0029599 @ rn6
Exon Skipping
Gene
ENSRNOG00000008102 | Dph7
Description
diphthamide biosynthesis 7 [Source:RGD Symbol;Acc:1304868]
Coordinates
chr3:2171051-2173408:+
Coord C1 exon
chr3:2171051-2171184
Coord A exon
chr3:2171515-2171602
Coord C2 exon
chr3:2173314-2173408
Length
88 bp
Sequences
Splice sites
3' ss Seq
CTTTTGCTGTTCTCCCACAGGTG
3' ss Score
12.92
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
Exon sequences
Seq C1 exon
CCTGCACCGGATGGCAGTGAGCCTCAAGTTCGTTTAGGTCGTCTCTACCTGTTCAGCTTCAGTGAGGACAACACGGCTAAACCTCTGCTTGAGGTCCAAAGAAGGGATTCTTCTGCTGTCCTGGACATGAAATG
Seq A exon
GTGCCATATCCCAGTGTCTGGCCATGTGCTTTTAGGCTTGGCAAATGCCAGTGGATCTGTAGAGCTGCTCCGCCTGATGGAATGTGAG
Seq C2 exon
AAGAACAGCTATACCCTGCAGCTTATATCCAGCCTTGCCCTGGATGAGAGCTGTCTATCCTTATCACTGGATTGGTCCACTGGGAAATCTGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008102-'3-4,'3-1,5-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.156 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTGAGCCTCAAGTTCGTT
R:
CATCCAGGGCAAGGCTGGATA
Band lengths:
167-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]