BtaEX0011968 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000038691 | DPH7
Description
diphthamide biosynthesis 7 [Source:HGNC Symbol;Acc:HGNC:25199]
Coordinates
chr11:105574514-105582014:+
Coord C1 exon
chr11:105574514-105574729
Coord A exon
chr11:105575808-105575895
Coord C2 exon
chr11:105581945-105582014
Length
88 bp
Sequences
Splice sites
3' ss Seq
GCACGTGCATTCTCTCCTAGGTG
3' ss Score
8.73
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
Exon sequences
Seq C1 exon
CGCCTCTGCCGCGCGCTACCCGCCACCACGGCCGCCGCCGCGTCCTCCGGGTGTGCGGGGGCCGACGGCCGAGTCCAGCTGTTGCAGGCTGTGGACACGGAGCACACCGTGGACTCGGTAGAGTGGTGCCCGCTGGCCGGCTGCAGGCACTTGCTGGCGTGCGGCACCTACCAGCTGTGGAAGCCGGAGGACTGGCCCGCCGACGGGGAGTGCCAG
Seq A exon
GTGTCACGTTCCAGTGGCTGGTCATCCCCTCTTGGGTGTGGCAGATGCTTCTGGGTCCATAGAGCTCCTCCGCTTGTTGCCATCTGAG
Seq C2 exon
GTGGGGACGATGGCCTCCTGAAGGGCTGGGACACCAGGATGCCCGACACTGCTGCCTTCAGCAGCCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038691_MULTIEX1-2/5=C1-5
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0040027=WD40=PU(11.1=16.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTTGCAGGCTGTGGACAC
R:
TGTCCCAGCCCTTCAGGAG
Band lengths:
171-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development