MmuALTD0004301-2/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000041911 | Dlx1
Description
distal-less homeobox 1 [Source:MGI Symbol;Acc:MGI:94901]
Coordinates
chr2:71367164-71368122:+
Coord C1 exon
chr2:71367164-71367255
Coord A exon
chr2:71367256-71367471
Coord C2 exon
chr2:71367685-71368122
Length
216 bp
Sequences
Splice sites
5' ss Seq
TAGGTGACC
5' ss Score
3.89
3' ss Seq
CTCCGCGCGCTCTGTTGCAGAGG
3' ss Score
8.24
Exon sequences
Seq C1 exon
ACCCGTGCAGCCTCGAGCTGGAGTGGCCAGCTGGGCCTGGAGAGATGCGAGCAAGCCCCTGGGAACGGTGGCAACGGCGGGGCGGCGGCCGA
Seq A exon
GTGAGTGAGTTGGGCCAGAGGGCCCCCAAACCCAGATCCCCGGGATGTGGCCGAGAGAACCCCAACCTGGGAGGCGCGGCCTGGAGCGCGCTGAGCTAGGCACAAGACGCTCAGAAGGACCGCTGGCTGCAGGCTACCTGGGTTGTCGCCCAGTGCGCGACTCCGCGATCCAGAGACCGCGGCCGGACTCTGGAGCGGCGCTCCGCACCGGACTAG
Seq C2 exon
AGGAGCCCCGGCCGGGACGTGTGGACCGGATTCTCCCCAGGCCGGGCCGCGTCGCCCGCTCTAGTCCAGCCGAGCCCGAGCTTCTCGGACCAATCCCCGGTGATTATGCAAGAGAGCCGACCAATCAGCTCCACCAGCTCATGAATATTTATGACCTTGGCTGAGTCAAAGCTTTGAACCGAGTTTGGGGAGCTCGGCAGCATCATGCTTAGACTTTTCAAAGAGACAAACTCCATTTTCTTATGAATGGAAAGTGAAAACCCCTGTTCCGCTTAAATTGGGTTCCTTCCTGTCCTGAGAAACATAGAGACCCCCAAAAGGGAAGCAGAGGAGAGAAAGACCCACACCCAGACCCCGCGAGAAGAGATGACCATGACCACCATGCCAGAAAGTCTCAACAGCCCCGTGTCGGGCAAGGCTGTGTTTATGGAGTTTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041911-2-4,3-4-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGGAACGGTGGCAAC
R:
GCGGAACAGGGGTTTTCACTT
Band lengths:
307-523
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: