MmuEX0041374 @ mm9
Exon Skipping
Gene
ENSMUSG00000026927 | Sdccag3
Description
serologically defined colon cancer antigen 3 [Source:MGI Symbol;Acc:MGI:1915362]
Coordinates
chr2:26243076-26244836:-
Coord C1 exon
chr2:26244669-26244836
Coord A exon
chr2:26244012-26244080
Coord C2 exon
chr2:26243076-26243191
Length
69 bp
Sequences
Splice sites
3' ss Seq
CTGACCATGTCTTTTTGCAGGTT
3' ss Score
10.08
5' ss Seq
GAGGTAGAG
5' ss Score
4.86
Exon sequences
Seq C1 exon
GGCGTTCGGCGCTGGCTTCCGGCCCGCCGAGCCGGATGAGGCAGGGGCCGGCGACTGCCTTGCGGGCCATGGGGCCGCGGCCGGGTTAGGGCGCGGCGATGTCGGGCTACGCGCGGCGGCAGGGCGCGCCCCCTCTATCGCGGACGCGGAGCCTTGTGGTTCCCGACG
Seq A exon
GTTTTGGCTATGGAAAGGGGAAATGTACTAACCAAGGTCCTTCGGGAGCCCCTGAGACGCGCTTTGGAG
Seq C2 exon
GTGACAAACTTGAAGACCTTGAAGAAGCCAATCCATTCTCCTTCAAAGAGTTTTTGAAAACCAAGAACCTCAGCCTGTCAAAAGAAGACACGACCACCAGCCGAATTTACCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026927_MULTIEX2-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.757 A=0.875 C2=0.419
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAGGGCGCGGCGATGTC
R:
TCGTGTCTTCTTTTGACAGGCT
Band lengths:
176-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: